Gene annotation
Transcriptome id Sobic.001G298400.3
Synonym ATCOL4, COL4, Sb01g029080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT motif family protein, expressed
UniProt A0A1Z5S8I6
Pfam PF06203
Panther DB PTHR31319 PTHR31319:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G15850 : CONSTANS-like 1
RAP-DB (Rice) LOC_Os10g41100.1 : CCT motif family protein, expressed
MaizeGDB (Corn) Zm00025a003313 , Zm00025a051967
Brachypodium -
Barley HORVU2Hr1G085910.21
Wheat TraesCS2B02G372000 , TraesCS2D02G351900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
2 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
3 Sobic.001G331500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G256100 expressed protein -
5 Sobic.003G314000 jacalin-like lectin domain containing protein, expressed -
6 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
7 Sobic.004G165500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.010G218200 FAD binding domain of DNA photolyase domain containing protein, expressed K01669: deoxyribodipyrimidine photo-lyase
9 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
10 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
13 Sobic.003G047700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 3, putative, expressed -
14 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
15 Sobic.001G446100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
17 Sobic.009G250400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed K03093: RNA polymerase sigma factor
18 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
19 Sobic.001G540300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G298400 Sobic001G298400 Sobic010G104800 Sobic010G104800 Sobic001G298400--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic001G298400--Sobic001G073300 Sobic001G331500 Sobic001G331500 Sobic001G298400--Sobic001G331500 Sobic009G256100 Sobic009G256100 Sobic001G298400--Sobic009G256100 Sobic003G314000 Sobic003G314000 Sobic001G298400--Sobic003G314000 Sobic002G119100 Sobic002G119100 Sobic001G298400--Sobic002G119100 Sobic004G165500 Sobic004G165500 Sobic001G298400--Sobic004G165500 Sobic010G218200 Sobic010G218200 Sobic001G298400--Sobic010G218200 Sobic002G404800 Sobic002G404800 Sobic001G298400--Sobic002G404800 Sobic010G104800--Sobic001G073300 Sobic006G153400 Sobic006G153400 Sobic010G104800--Sobic006G153400 Sobic010G104800--Sobic009G256100 Sobic007G006400 Sobic007G006400 Sobic010G104800--Sobic007G006400 Sobic008G129900 Sobic008G129900 Sobic010G104800--Sobic008G129900 Sobic004G112100 Sobic004G112100 Sobic010G104800--Sobic004G112100 Sobic001G244600 Sobic001G244600 Sobic010G104800--Sobic001G244600 Sobic006G161500 Sobic006G161500 Sobic010G104800--Sobic006G161500 Sobic002G390100 Sobic002G390100 Sobic010G104800--Sobic002G390100 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic003G409700 Sobic003G409700 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic010G231300 Sobic010G231300 Sobic001G073300--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic001G331500--Sobic004G165500 Sobic001G331500--Sobic001G298400 Sobic007G105500 Sobic007G105500 Sobic001G331500--Sobic007G105500 Sobic006G093100 Sobic006G093100 Sobic001G331500--Sobic006G093100 Sobic003G367500 Sobic003G367500 Sobic001G331500--Sobic003G367500 Sobic004G215800 Sobic004G215800 Sobic001G331500--Sobic004G215800 Sobic001G331500--Sobic002G404800 Sobic003G036200 Sobic003G036200 Sobic001G331500--Sobic003G036200 Sobic009G048900 Sobic009G048900 Sobic001G331500--Sobic009G048900 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic009G256100--Sobic008G129900 Sobic009G194500 Sobic009G194500 Sobic003G314000--Sobic009G194500 Sobic003G314000--Sobic010G231300 Sobic002G056500 Sobic002G056500 Sobic003G314000--Sobic002G056500 Sobic003G314000--Sobic008G129900 Sobic003G314000--Sobic002G119100 Sobic003G314000--Sobic001G244600 Sobic004G322600 Sobic004G322600 Sobic003G314000--Sobic004G322600 Sobic003G314000--Sobic010G104800 Sobic003G314000--Sobic006G161500 Sobic002G119100--Sobic009G194500 Sobic002G119100--Sobic004G322600 Sobic002G119100--Sobic006G161500 Sobic008G038500 Sobic008G038500 Sobic002G119100--Sobic008G038500 Sobic004G127800 Sobic004G127800 Sobic002G119100--Sobic004G127800 Sobic002G119100--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic002G119100--Sobic004G322700 Sobic007G227100 Sobic007G227100 Sobic002G119100--Sobic007G227100 Sobic002G293500 Sobic002G293500 Sobic002G119100--Sobic002G293500 Sobic004G165500--Sobic003G042900 Sobic004G165500--Sobic001G073300 Sobic004G165500--Sobic002G390100 Sobic004G165500--Sobic009G256100 Sobic004G165500--Sobic007G105500 Sobic004G165500--Sobic006G093100 Sobic004G165500--Sobic002G404800 Sobic004G165500--Sobic004G215800 Sobic004G165500--Sobic010G104800 Sobic010G218200--Sobic002G390100 Sobic010G218200--Sobic009G194500 Sobic010G218200--Sobic006G161500 Sobic002G196600 Sobic002G196600 Sobic010G218200--Sobic002G196600 Sobic010G218200--Sobic003G042900 Sobic010G218200--Sobic001G073300 Sobic010G218200--Sobic008G129900 Sobic010G218200--Sobic010G231300 Sobic010G218200--Sobic002G119100 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic005G101200 Sobic005G101200 Sobic002G404800--Sobic005G101200 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic002G404800--Sobic008G033000 Sobic002G404800--Sobic004G112100
Octagon: transcription factors


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