Gene annotation
Transcriptome id Sobic.010G218200.1
Synonym Sb10g026420, CRY3
Functional annotation FAD binding domain of DNA photolyase domain containing protein, expressed
UniProt C5Z7B4
Pfam PF00875 PF03441
Panther DB PTHR11455 PTHR11455:SF22
NCBI CDD KOG0133; Deoxyribodipyrimidine photolyase/cryptochrome
KEGG Orthology K01669; deoxyribodipyrimidine photo-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24850 : cryptochrome 3
RAP-DB (Rice) LOC_Os06g45100.1 : FAD binding domain of DNA photolyase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051725
Brachypodium KQK16965 , KQK16964
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
2 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
4 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
5 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
7 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
10 Sobic.003G314000 jacalin-like lectin domain containing protein, expressed -
11 Sobic.009G256100 expressed protein -
12 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
13 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
14 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
15 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
16 Sobic.001G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
17 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
18 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
20 Sobic.006G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative leucine-rich repeatcontaining protein DDB_G0290503(PubMedID : 31721651)@- -


Gene co-expression network
sample Sobic010G218200 Sobic010G218200 Sobic002G390100 Sobic002G390100 Sobic010G218200--Sobic002G390100 Sobic009G194500 Sobic009G194500 Sobic010G218200--Sobic009G194500 Sobic006G161500 Sobic006G161500 Sobic010G218200--Sobic006G161500 Sobic002G196600 Sobic002G196600 Sobic010G218200--Sobic002G196600 Sobic003G042900 Sobic003G042900 Sobic010G218200--Sobic003G042900 Sobic001G073300 Sobic001G073300 Sobic010G218200--Sobic001G073300 Sobic008G129900 Sobic008G129900 Sobic010G218200--Sobic008G129900 Sobic010G231300 Sobic010G231300 Sobic010G218200--Sobic010G231300 Sobic002G119100 Sobic002G119100 Sobic010G218200--Sobic002G119100 Sobic003G036200 Sobic003G036200 Sobic002G390100--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic002G390100--Sobic002G404800 Sobic009G256100 Sobic009G256100 Sobic002G390100--Sobic009G256100 Sobic005G068700 Sobic005G068700 Sobic002G390100--Sobic005G068700 Sobic004G215800 Sobic004G215800 Sobic002G390100--Sobic004G215800 Sobic007G105500 Sobic007G105500 Sobic002G390100--Sobic007G105500 Sobic002G390100--Sobic003G042900 Sobic010G104800 Sobic010G104800 Sobic002G390100--Sobic010G104800 Sobic002G390100--Sobic001G073300 Sobic009G194500--Sobic002G119100 Sobic009G194500--Sobic006G161500 Sobic009G194500--Sobic010G231300 Sobic004G322600 Sobic004G322600 Sobic009G194500--Sobic004G322600 Sobic008G038500 Sobic008G038500 Sobic009G194500--Sobic008G038500 Sobic003G314000 Sobic003G314000 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic004G127800 Sobic004G127800 Sobic009G194500--Sobic004G127800 Sobic006G235400 Sobic006G235400 Sobic009G194500--Sobic006G235400 Sobic004G128900 Sobic004G128900 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic006G161500--Sobic001G073300 Sobic006G161500--Sobic002G119100 Sobic006G161500--Sobic009G194500 Sobic002G196600--Sobic002G390100 Sobic006G093100 Sobic006G093100 Sobic002G196600--Sobic006G093100 Sobic002G196600--Sobic010G231300 Sobic002G196600--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G196600--Sobic002G219300 Sobic002G196600--Sobic001G073300 Sobic001G244700 Sobic001G244700 Sobic002G196600--Sobic001G244700 Sobic002G196600--Sobic002G404800 Sobic002G196600--Sobic006G161500 Sobic003G042900--Sobic002G404800 Sobic003G042900--Sobic002G390100 Sobic003G042900--Sobic001G073300 Sobic003G042900--Sobic009G256100 Sobic004G165500 Sobic004G165500 Sobic003G042900--Sobic004G165500 Sobic003G042900--Sobic010G104800 Sobic003G042900--Sobic004G215800 Sobic008G033000 Sobic008G033000 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G244600 Sobic001G244600 Sobic001G073300--Sobic001G244600 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic001G073300--Sobic010G231300 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic001G258200 Sobic001G258200 Sobic008G129900--Sobic001G258200 Sobic001G217900 Sobic001G217900 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic001G263100 Sobic001G263100 Sobic008G129900--Sobic001G263100 Sobic002G206300 Sobic002G206300 Sobic008G129900--Sobic002G206300 Sobic003G341300 Sobic003G341300 Sobic008G129900--Sobic003G341300 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic010G231300--Sobic001G217900 Sobic010G231300--Sobic001G263100 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic002G119100--Sobic009G194500 Sobic002G119100--Sobic004G322600 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic002G119100--Sobic004G127800 Sobic002G119100--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic002G119100--Sobic004G322700 Sobic007G227100 Sobic007G227100 Sobic002G119100--Sobic007G227100 Sobic002G293500 Sobic002G293500 Sobic002G119100--Sobic002G293500
Octagon: transcription factors


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