Gene annotation
Transcriptome id Sobic.004G323800.1
Synonym Sb04g035390
Functional annotation peptide chain release factor protein, putative, expressed
UniProt C5XUA1
Pfam PF00472 PF03462
Panther DB PTHR11075 PTHR11075:SF6
NCBI CDD KOG2726; Mitochondrial polypeptide chain release factor
KEGG Orthology K02836; peptide chain release factor 2
Gene Ontology GO:0006415; translational termination GO:0003747translation release factor activity GO:0016149translation release factor activity, codon specific GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT1G56350 : Peptide chain release factor 2
RAP-DB (Rice) LOC_Os03g19300.1 : peptide chain release factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a022401
Brachypodium KQK22018
Barley HORVU4Hr1G054130.2 , HORVU4Hr1G054130.1 , HORVU4Hr1G054130.7 , HORVU4Hr1G054130.6 , HORVU4Hr1G054130.5 , HORVU4Hr1G054130.4 , HORVU4Hr1G054130.9 , HORVU4Hr1G054130.10
Wheat TraesCS4B02G184700 , TraesCS4B02G184700 , TraesCS4A02G120000 , TraesCS4A02G120000 , TraesCS4D02G186000
Populus PNT06040


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
2 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
3 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
4 Sobic.010G181100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD binding domain containing protein, expressed -
5 Sobic.009G256100 expressed protein -
6 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
7 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
8 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
9 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
10 Sobic.003G179350 - -
11 Sobic.003G426700 expressed protein -
12 Sobic.001G540300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
14 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
15 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
16 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
17 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
18 Sobic.004G317500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
19 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
20 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic004G323800 Sobic004G323800 Sobic002G390100 Sobic002G390100 Sobic004G323800--Sobic002G390100 Sobic002G196600 Sobic002G196600 Sobic004G323800--Sobic002G196600 Sobic001G244600 Sobic001G244600 Sobic004G323800--Sobic001G244600 Sobic010G181100 Sobic010G181100 Sobic004G323800--Sobic010G181100 Sobic009G256100 Sobic009G256100 Sobic004G323800--Sobic009G256100 Sobic006G120500 Sobic006G120500 Sobic004G323800--Sobic006G120500 Sobic006G093100 Sobic006G093100 Sobic004G323800--Sobic006G093100 Sobic005G068700 Sobic005G068700 Sobic004G323800--Sobic005G068700 Sobic003G036200 Sobic003G036200 Sobic004G323800--Sobic003G036200 Sobic002G390100--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic002G390100--Sobic002G404800 Sobic002G390100--Sobic009G256100 Sobic002G390100--Sobic005G068700 Sobic004G215800 Sobic004G215800 Sobic002G390100--Sobic004G215800 Sobic007G105500 Sobic007G105500 Sobic002G390100--Sobic007G105500 Sobic003G042900 Sobic003G042900 Sobic002G390100--Sobic003G042900 Sobic010G104800 Sobic010G104800 Sobic002G390100--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic002G390100--Sobic001G073300 Sobic002G196600--Sobic002G390100 Sobic002G196600--Sobic006G093100 Sobic010G231300 Sobic010G231300 Sobic002G196600--Sobic010G231300 Sobic002G196600--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G196600--Sobic002G219300 Sobic002G196600--Sobic001G073300 Sobic001G244700 Sobic001G244700 Sobic002G196600--Sobic001G244700 Sobic002G196600--Sobic002G404800 Sobic006G161500 Sobic006G161500 Sobic002G196600--Sobic006G161500 Sobic008G129900 Sobic008G129900 Sobic001G244600--Sobic008G129900 Sobic001G244600--Sobic010G104800 Sobic001G244600--Sobic006G161500 Sobic001G244600--Sobic009G256100 Sobic001G244600--Sobic001G073300 Sobic007G058100 Sobic007G058100 Sobic001G244600--Sobic007G058100 Sobic001G217900 Sobic001G217900 Sobic001G244600--Sobic001G217900 Sobic008G038500 Sobic008G038500 Sobic001G244600--Sobic008G038500 Sobic001G244600--Sobic010G231300 Sobic010G181100--Sobic005G068700 Sobic002G056500 Sobic002G056500 Sobic010G181100--Sobic002G056500 Sobic002G190300 Sobic002G190300 Sobic010G181100--Sobic002G190300 Sobic001G258200 Sobic001G258200 Sobic010G181100--Sobic001G258200 Sobic004G189800 Sobic004G189800 Sobic010G181100--Sobic004G189800 Sobic009G123900 Sobic009G123900 Sobic010G181100--Sobic009G123900 Sobic005G101200 Sobic005G101200 Sobic010G181100--Sobic005G101200 Sobic007G090403 Sobic007G090403 Sobic010G181100--Sobic007G090403 Sobic009G219100 Sobic009G219100 Sobic010G181100--Sobic009G219100 Sobic009G256100--Sobic010G104800 Sobic006G153400 Sobic006G153400 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic009G256100--Sobic007G058100 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic009G256100--Sobic008G129900 Sobic004G317500 Sobic004G317500 Sobic006G120500--Sobic004G317500 Sobic008G033200 Sobic008G033200 Sobic006G120500--Sobic008G033200 Sobic002G324500 Sobic002G324500 Sobic006G120500--Sobic002G324500 Sobic005G001700 Sobic005G001700 Sobic006G120500--Sobic005G001700 Sobic004G027600 Sobic004G027600 Sobic006G120500--Sobic004G027600 Sobic002G403600 Sobic002G403600 Sobic006G120500--Sobic002G403600 Sobic006G120500--Sobic003G036200 Sobic006G064100 Sobic006G064100 Sobic006G120500--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic006G120500--Sobic010G085100 Sobic006G093100--Sobic004G215800 Sobic006G093100--Sobic002G390100 Sobic006G093100--Sobic003G036200 Sobic006G093100--Sobic002G196600 Sobic006G093100--Sobic007G105500 Sobic006G093100--Sobic008G033200 Sobic006G093100--Sobic003G042900 Sobic008G033000 Sobic008G033000 Sobic006G093100--Sobic008G033000 Sobic006G093100--Sobic002G404800 Sobic005G068700--Sobic001G258200 Sobic005G068700--Sobic005G101200 Sobic005G068700--Sobic003G185900 Sobic005G068700--Sobic002G056500 Sobic005G068700--Sobic008G129900 Sobic005G068700--Sobic008G033000 Sobic005G068700--Sobic001G217900 Sobic005G068700--Sobic002G390100 Sobic002G206300 Sobic002G206300 Sobic005G068700--Sobic002G206300 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic003G036200--Sobic005G101200 Sobic003G036200--Sobic010G085100 Sobic003G036200--Sobic009G256100 Sobic003G036200--Sobic008G033200
Octagon: transcription factors


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