Gene annotation
Transcriptome id Sobic.001G451500.1,Sobic.001G451500.2,Sobic.001G451500.3
Synonym ATGSR1, 1, ATGLN1, Sb01g042450, GSR 1 , GLN1;4;GLN1;4; GLN1;1, GLN1, GSR1
Functional annotation Cytosolic glutamine synthase1.4 (PubMedID : 26317421)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 26976818)
glutamine synthetase, catalytic domain containing protein, expressed
UniProt A0A1B6QPL7 , B5B9V8
Pfam PF03951 PF00120 PF03951
Panther DB PTHR20852 PTHR20852:SF61
NCBI CDD KOG0683; Glutamine synthetase
KEGG Orthology K01915; glnA, glutamine synthetase
Gene Ontology GO:0006807; nitrogen compound metabolic process GO:0006542glutamine biosynthetic process GO:0004356glutamate-ammonia ligase activity


Orthologs (automatic annotation)
TAIR AT5G37600 : glutamine synthase clone R1
RAP-DB (Rice) LOC_Os03g12290.1 : glutamine synthetase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001369 , Zm00025a032673 , Zm00025a007867 , Zm00025a053030
Brachypodium KQK13627 , KQK22827 , KQK02034
Barley HORVU4Hr1G007610.2 , HORVU4Hr1G007610.1 , HORVU6Hr1G074030.2 , HORVU6Hr1G074030.3 , HORVU6Hr1G074030.1 , HORVU6Hr1G074030.4 , HORVU4Hr1G066860.4 , HORVU4Hr1G066860.5 , HORVU4Hr1G066860.6 , HORVU4Hr1G066860.7 , HORVU4Hr1G066860.1 , HORVU4Hr1G066860.2 , HORVU4Hr1G066860.3 , HORVU4Hr1G066860.8
Wheat TraesCS4B02G240900 , TraesCS4A02G063800 , TraesCS4D02G240700 , TraesCS6A02G298100 , TraesCS6A02G298100 , TraesCS6B02G327500 , TraesCS6B02G327500 , TraesCS6B02G327500
Populus -


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cDNA sequences
Sobic.001G451500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337925 - -
2 Sobic.001G397500 AMP-binding enzyme, putative, expressed -
3 Sobic.004G106300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
4 Sobic.002G004800 leucine rich repeat domain containing protein, putative, expressed -
5 Sobic.002G126600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
6 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
7 Sobic.003G059000 POEI43 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed -
8 Sobic.002G233100 expressed protein -
9 Sobic.001G185800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.003G228600 cytochrome P450 72A1, putative, expressed -
11 Sobic.005G104800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.003G184100 auxin-induced protein 5NG4, putative, expressed -
13 Sobic.002G134001 - K14490: histidine-containing phosphotransfer peotein
14 Sobic.002G416900 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.001G063200 VQ domain containing protein, putative, expressed -
16 Sobic.001G416200 Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed -
17 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
18 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
19 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
20 Sobic.004G349125 - -


Gene co-expression network
sample Sobic001G451500 Sobic001G451500 Sobic004G337925 Sobic004G337925 Sobic001G451500--Sobic004G337925 Sobic001G397500 Sobic001G397500 Sobic001G451500--Sobic001G397500 Sobic004G106300 Sobic004G106300 Sobic001G451500--Sobic004G106300 Sobic002G004800 Sobic002G004800 Sobic001G451500--Sobic002G004800 Sobic002G126600 Sobic002G126600 Sobic001G451500--Sobic002G126600 Sobic010G027000 Sobic010G027000 Sobic001G451500--Sobic010G027000 Sobic003G059000 Sobic003G059000 Sobic001G451500--Sobic003G059000 Sobic002G233100 Sobic002G233100 Sobic001G451500--Sobic002G233100 Sobic001G185800 Sobic001G185800 Sobic001G451500--Sobic001G185800 Sobic007G136100 Sobic007G136100 Sobic004G337925--Sobic007G136100 Sobic003G261500 Sobic003G261500 Sobic004G337925--Sobic003G261500 Sobic006G254100 Sobic006G254100 Sobic004G337925--Sobic006G254100 Sobic010G193900 Sobic010G193900 Sobic004G337925--Sobic010G193900 Sobic004G337925--Sobic001G397500 Sobic002G262400 Sobic002G262400 Sobic004G337925--Sobic002G262400 Sobic003G055700 Sobic003G055700 Sobic004G337925--Sobic003G055700 Sobic008G046800 Sobic008G046800 Sobic004G337925--Sobic008G046800 Sobic006G176600 Sobic006G176600 Sobic004G337925--Sobic006G176600 Sobic001G397500--Sobic004G337925 Sobic004G136600 Sobic004G136600 Sobic001G397500--Sobic004G136600 Sobic003G215200 Sobic003G215200 Sobic001G397500--Sobic003G215200 Sobic001G397500--Sobic001G451500 Sobic001G397500--Sobic006G254100 Sobic003G327900 Sobic003G327900 Sobic001G397500--Sobic003G327900 Sobic006G011400 Sobic006G011400 Sobic001G397500--Sobic006G011400 Sobic005G026600 Sobic005G026600 Sobic001G397500--Sobic005G026600 Sobic003G184100 Sobic003G184100 Sobic001G397500--Sobic003G184100 Sobic004G312200 Sobic004G312200 Sobic004G106300--Sobic004G312200 Sobic010G082000 Sobic010G082000 Sobic004G106300--Sobic010G082000 Sobic003G203600 Sobic003G203600 Sobic004G106300--Sobic003G203600 Sobic003G240400 Sobic003G240400 Sobic004G106300--Sobic003G240400 Sobic003G128800 Sobic003G128800 Sobic004G106300--Sobic003G128800 Sobic006G196400 Sobic006G196400 Sobic004G106300--Sobic006G196400 Sobic002G195600 Sobic002G195600 Sobic004G106300--Sobic002G195600 Sobic006G092700 Sobic006G092700 Sobic004G106300--Sobic006G092700 Sobic003G426500 Sobic003G426500 Sobic004G106300--Sobic003G426500 Sobic002G004900 Sobic002G004900 Sobic002G004800--Sobic002G004900 Sobic009G177700 Sobic009G177700 Sobic002G004800--Sobic009G177700 Sobic003G113700 Sobic003G113700 Sobic002G004800--Sobic003G113700 Sobic009G139400 Sobic009G139400 Sobic002G004800--Sobic009G139400 Sobic005G092900 Sobic005G092900 Sobic002G004800--Sobic005G092900 Sobic009G009600 Sobic009G009600 Sobic002G004800--Sobic009G009600 Sobic008G158100 Sobic008G158100 Sobic002G004800--Sobic008G158100 Sobic004G049900 Sobic004G049900 Sobic002G004800--Sobic004G049900 Sobic007G087200 Sobic007G087200 Sobic002G004800--Sobic007G087200 Sobic004G272800 Sobic004G272800 Sobic002G126600--Sobic004G272800 Sobic002G153500 Sobic002G153500 Sobic002G126600--Sobic002G153500 Sobic003G386000 Sobic003G386000 Sobic002G126600--Sobic003G386000 Sobic010G239500 Sobic010G239500 Sobic002G126600--Sobic010G239500 Sobic009G149400 Sobic009G149400 Sobic002G126600--Sobic009G149400 Sobic001G281400 Sobic001G281400 Sobic002G126600--Sobic001G281400 Sobic002G204100 Sobic002G204100 Sobic002G126600--Sobic002G204100 Sobic008G032100 Sobic008G032100 Sobic002G126600--Sobic008G032100 Sobic003G253000 Sobic003G253000 Sobic002G126600--Sobic003G253000 Sobic003G336000 Sobic003G336000 Sobic010G027000--Sobic003G336000 Sobic002G291200 Sobic002G291200 Sobic010G027000--Sobic002G291200 Sobic010G277800 Sobic010G277800 Sobic010G027000--Sobic010G277800 Sobic009G217900 Sobic009G217900 Sobic010G027000--Sobic009G217900 Sobic002G358800 Sobic002G358800 Sobic010G027000--Sobic002G358800 Sobic004G058200 Sobic004G058200 Sobic010G027000--Sobic004G058200 Sobic003G243600 Sobic003G243600 Sobic010G027000--Sobic003G243600 Sobic001G406100 Sobic001G406100 Sobic010G027000--Sobic001G406100 Sobic002G358400 Sobic002G358400 Sobic010G027000--Sobic002G358400 Sobic001G314600 Sobic001G314600 Sobic003G059000--Sobic001G314600 Sobic001G318300 Sobic001G318300 Sobic003G059000--Sobic001G318300 Sobic002G329200 Sobic002G329200 Sobic003G059000--Sobic002G329200 Sobic003G132400 Sobic003G132400 Sobic003G059000--Sobic003G132400 Sobic001G308600 Sobic001G308600 Sobic003G059000--Sobic001G308600 Sobic006G150100 Sobic006G150100 Sobic003G059000--Sobic006G150100 Sobic007G021700 Sobic007G021700 Sobic003G059000--Sobic007G021700 Sobic001G542000 Sobic001G542000 Sobic003G059000--Sobic001G542000 Sobic010G006200 Sobic010G006200 Sobic003G059000--Sobic010G006200 Sobic004G001000 Sobic004G001000 Sobic002G233100--Sobic004G001000 Sobic003G366600 Sobic003G366600 Sobic002G233100--Sobic003G366600 Sobic002G233100--Sobic003G184100 Sobic002G312900 Sobic002G312900 Sobic002G233100--Sobic002G312900 Sobic005G043000 Sobic005G043000 Sobic002G233100--Sobic005G043000 Sobic002G196100 Sobic002G196100 Sobic002G233100--Sobic002G196100 Sobic003G404600 Sobic003G404600 Sobic002G233100--Sobic003G404600 Sobic007G161400 Sobic007G161400 Sobic002G233100--Sobic007G161400 Sobic006G059700 Sobic006G059700 Sobic002G233100--Sobic006G059700 Sobic010G259001 Sobic010G259001 Sobic001G185800--Sobic010G259001 Sobic001G302200 Sobic001G302200 Sobic001G185800--Sobic001G302200 Sobic004G130600 Sobic004G130600 Sobic001G185800--Sobic004G130600 Sobic010G254300 Sobic010G254300 Sobic001G185800--Sobic010G254300 Sobic001G071800 Sobic001G071800 Sobic001G185800--Sobic001G071800 Sobic003G229600 Sobic003G229600 Sobic001G185800--Sobic003G229600 Sobic004G165500 Sobic004G165500 Sobic001G185800--Sobic004G165500 Sobic004G317500 Sobic004G317500 Sobic001G185800--Sobic004G317500 Sobic001G043000 Sobic001G043000 Sobic001G185800--Sobic001G043000
Octagon: transcription factors


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