Gene annotation
Transcriptome id Sobic.004G337925.1,Sobic.004G337925.2
Synonym -
Functional annotation -
UniProt A0A1Z5RQG6 , A0A1Z5RQG1
Pfam PF12861 PF14624 PF00092 PF17123 PF14624 PF00092
Panther DB PTHR10579 PTHR10579:SF50
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0005680; anaphase-promoting complex GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os02g56280.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032865 , Zm00025a022534
Brachypodium PNT69402
Barley HORVU6Hr1G088580.5 , HORVU6Hr1G088580.4 , HORVU6Hr1G088580.7 , HORVU6Hr1G088580.6 , HORVU6Hr1G088580.1 , HORVU6Hr1G088580.3 , HORVU6Hr1G088580.2
Wheat TraesCS6B02G413100 , TraesCS5A02G512800 , TraesCS5A02G512800 , TraesCS6D02G360000 , TraesCS6A02G375500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -
2 Sobic.003G261500 lipase, putative, expressed -
3 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
4 Sobic.010G193900 N-terminal asparagine amidohydrolase, putative, expressed K14662: protein N-terminal asparagine amidohydrolase
5 Sobic.001G397500 AMP-binding enzyme, putative, expressed -
6 Sobic.002G262400 solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
7 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
8 Sobic.008G046800 protein kinase family protein, putative, expressed -
9 Sobic.006G176600 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
10 Sobic.010G000900 spotted leaf 11, putative, expressed -
11 Sobic.006G259700 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
12 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
13 Sobic.003G362500 WD domain, G-beta repeat domain containing protein, expressed K10570: ERCC8, CKN1, DNA excision repair protein ERCC-8
14 Sobic.003G370900 expressed protein -
15 Sobic.001G451500 Cytosolic glutamine synthase1.4(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
16 Sobic.001G473300 stage II sporulation protein E, putative, expressed -
17 Sobic.003G261400 DUF292 domain containing protein, expressed -
18 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
19 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
20 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -


Gene co-expression network
sample Sobic004G337925 Sobic004G337925 Sobic007G136100 Sobic007G136100 Sobic004G337925--Sobic007G136100 Sobic003G261500 Sobic003G261500 Sobic004G337925--Sobic003G261500 Sobic006G254100 Sobic006G254100 Sobic004G337925--Sobic006G254100 Sobic010G193900 Sobic010G193900 Sobic004G337925--Sobic010G193900 Sobic001G397500 Sobic001G397500 Sobic004G337925--Sobic001G397500 Sobic002G262400 Sobic002G262400 Sobic004G337925--Sobic002G262400 Sobic003G055700 Sobic003G055700 Sobic004G337925--Sobic003G055700 Sobic008G046800 Sobic008G046800 Sobic004G337925--Sobic008G046800 Sobic006G176600 Sobic006G176600 Sobic004G337925--Sobic006G176600 Sobic001G283200 Sobic001G283200 Sobic007G136100--Sobic001G283200 Sobic007G136100--Sobic010G193900 Sobic007G136100--Sobic003G055700 Sobic003G261400 Sobic003G261400 Sobic007G136100--Sobic003G261400 Sobic003G372000 Sobic003G372000 Sobic007G136100--Sobic003G372000 Sobic004G081800 Sobic004G081800 Sobic007G136100--Sobic004G081800 Sobic007G136100--Sobic003G261500 Sobic007G136100--Sobic006G176600 Sobic001G049200 Sobic001G049200 Sobic007G136100--Sobic001G049200 Sobic003G261500--Sobic003G261400 Sobic003G217400 Sobic003G217400 Sobic003G261500--Sobic003G217400 Sobic010G000900 Sobic010G000900 Sobic003G261500--Sobic010G000900 Sobic003G261500--Sobic001G283200 Sobic007G168600 Sobic007G168600 Sobic003G261500--Sobic007G168600 Sobic001G051200 Sobic001G051200 Sobic003G261500--Sobic001G051200 Sobic004G212200 Sobic004G212200 Sobic003G261500--Sobic004G212200 Sobic003G124800 Sobic003G124800 Sobic003G261500--Sobic003G124800 Sobic004G086600 Sobic004G086600 Sobic003G261500--Sobic004G086600 Sobic003G214500 Sobic003G214500 Sobic006G254100--Sobic003G214500 Sobic001G473300 Sobic001G473300 Sobic006G254100--Sobic001G473300 Sobic004G235000 Sobic004G235000 Sobic006G254100--Sobic004G235000 Sobic003G355200 Sobic003G355200 Sobic006G254100--Sobic003G355200 Sobic003G370900 Sobic003G370900 Sobic006G254100--Sobic003G370900 Sobic009G229200 Sobic009G229200 Sobic006G254100--Sobic009G229200 Sobic003G243600 Sobic003G243600 Sobic006G254100--Sobic003G243600 Sobic009G084000 Sobic009G084000 Sobic006G254100--Sobic009G084000 Sobic003G264200 Sobic003G264200 Sobic006G254100--Sobic003G264200 Sobic010G193900--Sobic007G136100 Sobic010G002400 Sobic010G002400 Sobic010G193900--Sobic010G002400 Sobic010G193900--Sobic006G176600 Sobic002G294200 Sobic002G294200 Sobic010G193900--Sobic002G294200 Sobic004G173600 Sobic004G173600 Sobic010G193900--Sobic004G173600 Sobic002G114800 Sobic002G114800 Sobic010G193900--Sobic002G114800 Sobic010G193900--Sobic004G081800 Sobic010G193900--Sobic001G283200 Sobic010G193900--Sobic001G049200 Sobic001G397500--Sobic004G337925 Sobic004G136600 Sobic004G136600 Sobic001G397500--Sobic004G136600 Sobic003G215200 Sobic003G215200 Sobic001G397500--Sobic003G215200 Sobic001G451500 Sobic001G451500 Sobic001G397500--Sobic001G451500 Sobic001G397500--Sobic006G254100 Sobic003G327900 Sobic003G327900 Sobic001G397500--Sobic003G327900 Sobic006G011400 Sobic006G011400 Sobic001G397500--Sobic006G011400 Sobic005G026600 Sobic005G026600 Sobic001G397500--Sobic005G026600 Sobic003G184100 Sobic003G184100 Sobic001G397500--Sobic003G184100 Sobic001G181700 Sobic001G181700 Sobic002G262400--Sobic001G181700 Sobic004G348300 Sobic004G348300 Sobic002G262400--Sobic004G348300 Sobic003G012200 Sobic003G012200 Sobic002G262400--Sobic003G012200 Sobic007G098200 Sobic007G098200 Sobic002G262400--Sobic007G098200 Sobic003G344900 Sobic003G344900 Sobic002G262400--Sobic003G344900 Sobic002G262400--Sobic003G370900 Sobic001G199100 Sobic001G199100 Sobic002G262400--Sobic001G199100 Sobic009G075800 Sobic009G075800 Sobic002G262400--Sobic009G075800 Sobic003G063000 Sobic003G063000 Sobic002G262400--Sobic003G063000 Sobic003G055700--Sobic007G136100 Sobic005G044800 Sobic005G044800 Sobic003G055700--Sobic005G044800 Sobic001G219300 Sobic001G219300 Sobic003G055700--Sobic001G219300 Sobic001G048200 Sobic001G048200 Sobic003G055700--Sobic001G048200 Sobic006G244700 Sobic006G244700 Sobic003G055700--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic003G055700--Sobic008G032600 Sobic009G139900 Sobic009G139900 Sobic003G055700--Sobic009G139900 Sobic003G055700--Sobic003G372000 Sobic004G080100 Sobic004G080100 Sobic003G055700--Sobic004G080100 Sobic003G226500 Sobic003G226500 Sobic008G046800--Sobic003G226500 Sobic006G270900 Sobic006G270900 Sobic008G046800--Sobic006G270900 Sobic004G104900 Sobic004G104900 Sobic008G046800--Sobic004G104900 Sobic008G046800--Sobic001G051200 Sobic009G259400 Sobic009G259400 Sobic008G046800--Sobic009G259400 Sobic008G046800--Sobic010G000900 Sobic003G314100 Sobic003G314100 Sobic008G046800--Sobic003G314100 Sobic009G165800 Sobic009G165800 Sobic008G046800--Sobic009G165800 Sobic003G250500 Sobic003G250500 Sobic008G046800--Sobic003G250500 Sobic006G176600--Sobic002G294200 Sobic006G176600--Sobic010G193900 Sobic006G176600--Sobic010G002400 Sobic006G148200 Sobic006G148200 Sobic006G176600--Sobic006G148200 Sobic006G176600--Sobic001G049200 Sobic006G222100 Sobic006G222100 Sobic006G176600--Sobic006G222100 Sobic004G237600 Sobic004G237600 Sobic006G176600--Sobic004G237600 Sobic006G176600--Sobic007G136100 Sobic006G176600--Sobic003G012200
Octagon: transcription factors


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