Gene annotation
Transcriptome id Sobic.006G143100.1,Sobic.006G143100.2
Synonym 1, Sb06g022230, AMT1, ATAMT1
Functional annotation ammonium transporter protein, putative, expressed
UniProt A0A1B6PM21 , R4JAH1
Pfam PF00909
Panther DB PTHR11730 PTHR11730:SF40
NCBI CDD -
KEGG Orthology K03320; amt, AMT, ammonium transporter, Amt family
Gene Ontology GO:0016020; membrane GO:0015696ammonium transport GO:0008519ammonium transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT4G13510 : ammonium transporter 1;1
RAP-DB (Rice) LOC_Os04g43070.1 : ammonium transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a021129 , Zm00025a056484 , Zm00025a010662
Brachypodium KQK00374 , KQJ83515
Barley HORVU2Hr1G088420.2 , HORVU2Hr1G088420.3 , HORVU2Hr1G088420.6 , HORVU2Hr1G088420.4 , HORVU2Hr1G088420.5 , HORVU2Hr1G088410.6 , HORVU6Hr1G057870.1 , HORVU2Hr1G088380.1 , HORVU6Hr1G057870.2
Wheat -
Populus PNT25211


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cDNA sequences
Sobic.006G143100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
2 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
3 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
4 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
5 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
6 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
7 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
8 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
9 Sobic.007G223500 expressed protein -
10 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
11 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
12 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
13 Sobic.001G098800 ATP synthase F1, delta subunit family protein, putative, expressed -
14 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
15 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
16 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
17 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
18 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
19 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
20 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin


Gene co-expression network
sample Sobic006G143100 Sobic006G143100 Sobic002G352100 Sobic002G352100 Sobic006G143100--Sobic002G352100 Sobic004G235200 Sobic004G235200 Sobic006G143100--Sobic004G235200 Sobic007G136900 Sobic007G136900 Sobic006G143100--Sobic007G136900 Sobic001G046900 Sobic001G046900 Sobic006G143100--Sobic001G046900 Sobic010G189300 Sobic010G189300 Sobic006G143100--Sobic010G189300 Sobic001G177000 Sobic001G177000 Sobic006G143100--Sobic001G177000 Sobic005G087000 Sobic005G087000 Sobic006G143100--Sobic005G087000 Sobic008G063500 Sobic008G063500 Sobic006G143100--Sobic008G063500 Sobic007G223500 Sobic007G223500 Sobic006G143100--Sobic007G223500 Sobic002G352100--Sobic001G046900 Sobic002G352100--Sobic007G136900 Sobic002G352100--Sobic010G189300 Sobic002G338000 Sobic002G338000 Sobic002G352100--Sobic002G338000 Sobic002G352100--Sobic005G087000 Sobic003G055300 Sobic003G055300 Sobic002G352100--Sobic003G055300 Sobic009G165200 Sobic009G165200 Sobic002G352100--Sobic009G165200 Sobic009G229700 Sobic009G229700 Sobic002G352100--Sobic009G229700 Sobic002G352100--Sobic004G235200 Sobic004G235200--Sobic001G046900 Sobic005G042000 Sobic005G042000 Sobic004G235200--Sobic005G042000 Sobic006G105900 Sobic006G105900 Sobic004G235200--Sobic006G105900 Sobic004G235200--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic004G235200--Sobic006G073500 Sobic010G241000 Sobic010G241000 Sobic004G235200--Sobic010G241000 Sobic002G033900 Sobic002G033900 Sobic004G235200--Sobic002G033900 Sobic004G235200--Sobic010G189300 Sobic003G052500 Sobic003G052500 Sobic004G235200--Sobic003G052500 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic004G056900 Sobic004G056900 Sobic007G136900--Sobic004G056900 Sobic007G136900--Sobic010G189300 Sobic002G242000 Sobic002G242000 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic001G070500 Sobic001G070500 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic007G136900--Sobic009G229700 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic010G189300--Sobic001G046900 Sobic010G189300--Sobic006G073500 Sobic010G189300--Sobic002G352100 Sobic010G189300--Sobic002G033900 Sobic010G189300--Sobic009G229700 Sobic010G189300--Sobic004G235200 Sobic010G189300--Sobic005G087000 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic002G030200 Sobic002G030200 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000 Sobic005G087000--Sobic006G073500 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic005G087000--Sobic010G241000 Sobic005G087000--Sobic002G352100 Sobic005G087000--Sobic009G234600 Sobic005G087000--Sobic005G042000 Sobic008G063500--Sobic001G177000 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic008G063500--Sobic004G056900 Sobic008G063500--Sobic001G046900 Sobic002G316700 Sobic002G316700 Sobic008G063500--Sobic002G316700 Sobic008G063500--Sobic002G338000 Sobic007G223500--Sobic002G316700 Sobic007G207800 Sobic007G207800 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic008G134800 Sobic008G134800 Sobic007G223500--Sobic008G134800 Sobic009G143100 Sobic009G143100 Sobic007G223500--Sobic009G143100 Sobic001G425400 Sobic001G425400 Sobic007G223500--Sobic001G425400 Sobic007G071500 Sobic007G071500 Sobic007G223500--Sobic007G071500 Sobic003G387800 Sobic003G387800 Sobic007G223500--Sobic003G387800 Sobic008G066100 Sobic008G066100 Sobic007G223500--Sobic008G066100
Octagon: transcription factors


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