Gene annotation
| Transcriptome id | Sobic.004G312800.1 |
|---|---|
| Synonym | Sb04g034500 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) tyrosine phosphatase family protein, putative, expressed |
| UniProt | C5XTH0 |
| Pfam | PF13350 |
| Panther DB | PTHR31126 PTHR31126:SF15 |
| NCBI CDD | - |
| KEGG Orthology | K18045; SIW14, tyrosine-protein phosphatase SIW14 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G05000 : Phosphotyrosine protein phosphatases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g53160.1 : tyrosine phosphatase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a042656 , Zm00025a013438 , Zm00025a049606 , Zm00025a033066 , Zm00025a022259 , Zm00025a042489 |
| Brachypodium | KQK19061 , KQK01697 |
| Barley | HORVU7Hr1G035320.1 , HORVU7Hr1G035320.2 , HORVU7Hr1G035320.3 , HORVU6Hr1G079650.8 , HORVU6Hr1G079650.1 , HORVU6Hr1G079650.3 , HORVU6Hr1G079650.2 , HORVU6Hr1G079650.5 , HORVU6Hr1G079650.4 , HORVU6Hr1G079650.7 , HORVU6Hr1G079650.6 |
| Wheat | TraesCS7B02G073200 , TraesCS6D02G305600 , TraesCS6A02G325900 , TraesCS6A02G325900 , TraesCS7A02G168400 , TraesCS6A02G325900 , TraesCS7D02G169300 |
| Populus | - |
JBrowse
| Sobic.004G312800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G183900 | DUF581 domain containing protein, expressed | - |
| 2 | Sobic.009G210200 | Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed | - |
| 3 | Sobic.004G303200 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 4 | Sobic.006G235350 | - | - |
| 5 | Sobic.005G039700 | rhoGAP domain containing protein, expressed | - |
| 6 | Sobic.002G405100 | elongation factor TS family protein, expressed | K02357: tsf, elongation factor Ts |
| 7 | Sobic.002G133900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 8 | Sobic.009G140300 | MLO domain containing protein, putative, expressed | K08472: mlo protein |
| 9 | Sobic.004G331700 | aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed | K00811: aspartate aminotransferase, chloroplastic |
| 10 | Sobic.007G225500 | expressed protein | - |
| 11 | Sobic.003G042900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 12 | Sobic.009G174700 | serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed | - |
| 13 | Sobic.002G402700 | -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed | K00284: GLU, glutamate synthase (ferredoxin) |
| 14 | Sobic.002G272100 | expressed protein | - |
| 15 | Sobic.006G077400 | PAP fibrillin family domain containing protein, expressed | - |
| 16 | Sobic.010G160700 | PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 17 | Sobic.004G202200 | elongation factor Tu, putative, expressed | K02358: tuf, elongation factor Tu |
| 18 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 19 | Sobic.002G401800 | bifunctional thioredoxin reductase/thioredoxin, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 20 | Sobic.002G223700 | OsRhmbd15 - Putative Rhomboid homologue, expressed | - |
Gene co-expression network
Octagon: transcription factors
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