Gene annotation
Transcriptome id Sobic.005G039700.1
Synonym Sb05g003310
Functional annotation rhoGAP domain containing protein, expressed
UniProt C5Y4Z8
Pfam PF00786 PF00620
Panther DB PTHR23177 PTHR23177:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT5G22400 : Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
RAP-DB (Rice) LOC_Os11g05540.1 : rhoGAP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053911 , Zm00025a028790
Brachypodium KQJ92205 , KQJ92169 , PNT64174 , PNT64173 , KQJ89405 , KQJ89404 , KQJ89407 , KQJ89406 , KQJ89403
Barley HORVU4Hr1G021830.2 , HORVU5Hr1G039560.2 , HORVU5Hr1G039560.3 , HORVU4Hr1G021830.1 , HORVU5Hr1G042400.1 , HORVU5Hr1G042400.3 , HORVU5Hr1G042400.2 , HORVU5Hr1G039560.1
Wheat TraesCS5B02G126700 , TraesCS5D02G135300 , TraesCS5A02G127700 , TraesCS5A02G127700 , TraesCS4A02G197900 , TraesCS4A02G197900 , TraesCS4B02G117600 , TraesCS4D02G115300
Populus -


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cDNA sequences
Sobic.005G039700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G219300 ZOS9-13 - C2H2 zinc finger protein, expressed -
2 Sobic.004G312800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine phosphatase family protein, putative, expressed K18045: SIW14, tyrosine-protein phosphatase SIW14
3 Sobic.002G402700 -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed K00284: GLU, glutamate synthase (ferredoxin)
4 Sobic.003G391600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding domain containing protein, expressed -
5 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.010G173400 down-regulated TF in developmental senescence(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
7 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
8 Sobic.002G183900 DUF581 domain containing protein, expressed -
9 Sobic.001G011400 CRAL/TRIO domain containing protein, expressed -
10 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
11 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
12 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G095500 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.001G244700 RIO1 family protein, expressed K08851: TP53RK, PRPK, TP53 regulating kinase and related kinases
15 Sobic.010G214100 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
16 Sobic.001G097100 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
17 Sobic.001G483300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
19 Sobic.002G220900 expressed protein -
20 Sobic.001G521200 expressed protein -


Gene co-expression network
sample Sobic005G039700 Sobic005G039700 Sobic002G219300 Sobic002G219300 Sobic005G039700--Sobic002G219300 Sobic004G312800 Sobic004G312800 Sobic005G039700--Sobic004G312800 Sobic002G402700 Sobic002G402700 Sobic005G039700--Sobic002G402700 Sobic003G391600 Sobic003G391600 Sobic005G039700--Sobic003G391600 Sobic003G042900 Sobic003G042900 Sobic005G039700--Sobic003G042900 Sobic010G173400 Sobic010G173400 Sobic005G039700--Sobic010G173400 Sobic002G314400 Sobic002G314400 Sobic005G039700--Sobic002G314400 Sobic002G183900 Sobic002G183900 Sobic005G039700--Sobic002G183900 Sobic001G011400 Sobic001G011400 Sobic005G039700--Sobic001G011400 Sobic002G219300--Sobic003G042900 Sobic006G093100 Sobic006G093100 Sobic002G219300--Sobic006G093100 Sobic002G196600 Sobic002G196600 Sobic002G219300--Sobic002G196600 Sobic004G215800 Sobic004G215800 Sobic002G219300--Sobic004G215800 Sobic002G219300--Sobic010G173400 Sobic002G404800 Sobic002G404800 Sobic002G219300--Sobic002G404800 Sobic002G390100 Sobic002G390100 Sobic002G219300--Sobic002G390100 Sobic004G165500 Sobic004G165500 Sobic002G219300--Sobic004G165500 Sobic002G219300--Sobic005G039700 Sobic004G312800--Sobic002G183900 Sobic009G210200 Sobic009G210200 Sobic004G312800--Sobic009G210200 Sobic004G303200 Sobic004G303200 Sobic004G312800--Sobic004G303200 Sobic006G235350 Sobic006G235350 Sobic004G312800--Sobic006G235350 Sobic004G312800--Sobic005G039700 Sobic002G405100 Sobic002G405100 Sobic004G312800--Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic004G312800--Sobic002G133900 Sobic009G140300 Sobic009G140300 Sobic004G312800--Sobic009G140300 Sobic004G331700 Sobic004G331700 Sobic004G312800--Sobic004G331700 Sobic008G033000 Sobic008G033000 Sobic002G402700--Sobic008G033000 Sobic008G129900 Sobic008G129900 Sobic002G402700--Sobic008G129900 Sobic001G217900 Sobic001G217900 Sobic002G402700--Sobic001G217900 Sobic002G206300 Sobic002G206300 Sobic002G402700--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic002G402700--Sobic001G504400 Sobic005G001700 Sobic005G001700 Sobic002G402700--Sobic005G001700 Sobic001G540600 Sobic001G540600 Sobic002G402700--Sobic001G540600 Sobic010G231300 Sobic010G231300 Sobic002G402700--Sobic010G231300 Sobic001G378100 Sobic001G378100 Sobic002G402700--Sobic001G378100 Sobic002G324500 Sobic002G324500 Sobic003G391600--Sobic002G324500 Sobic003G318300 Sobic003G318300 Sobic003G391600--Sobic003G318300 Sobic003G391600--Sobic005G039700 Sobic002G220900 Sobic002G220900 Sobic003G391600--Sobic002G220900 Sobic006G120500 Sobic006G120500 Sobic003G391600--Sobic006G120500 Sobic004G151800 Sobic004G151800 Sobic003G391600--Sobic004G151800 Sobic003G391600--Sobic003G042900 Sobic004G154200 Sobic004G154200 Sobic003G391600--Sobic004G154200 Sobic002G186400 Sobic002G186400 Sobic003G391600--Sobic002G186400 Sobic003G042900--Sobic002G404800 Sobic003G042900--Sobic002G390100 Sobic001G073300 Sobic001G073300 Sobic003G042900--Sobic001G073300 Sobic009G256100 Sobic009G256100 Sobic003G042900--Sobic009G256100 Sobic003G042900--Sobic004G165500 Sobic010G104800 Sobic010G104800 Sobic003G042900--Sobic010G104800 Sobic003G042900--Sobic004G215800 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900 Sobic010G173400--Sobic003G042900 Sobic010G173400--Sobic001G011400 Sobic003G409700 Sobic003G409700 Sobic010G173400--Sobic003G409700 Sobic010G173400--Sobic008G129900 Sobic010G173400--Sobic008G033000 Sobic010G173400--Sobic002G404800 Sobic010G173400--Sobic002G402700 Sobic010G173400--Sobic002G219300 Sobic010G173400--Sobic001G073300 Sobic003G085100 Sobic003G085100 Sobic002G314400--Sobic003G085100 Sobic003G150800 Sobic003G150800 Sobic002G314400--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic002G314400--Sobic005G111550 Sobic005G063000 Sobic005G063000 Sobic002G314400--Sobic005G063000 Sobic004G235600 Sobic004G235600 Sobic002G314400--Sobic004G235600 Sobic001G001300 Sobic001G001300 Sobic002G314400--Sobic001G001300 Sobic008G001900 Sobic008G001900 Sobic002G314400--Sobic008G001900 Sobic002G314400--Sobic005G001700 Sobic010G214100 Sobic010G214100 Sobic002G314400--Sobic010G214100 Sobic001G483300 Sobic001G483300 Sobic002G183900--Sobic001G483300 Sobic002G183900--Sobic004G312800 Sobic002G183900--Sobic001G011400 Sobic002G306800 Sobic002G306800 Sobic002G183900--Sobic002G306800 Sobic002G183900--Sobic010G173400 Sobic002G183900--Sobic003G042900 Sobic002G183900--Sobic002G219300 Sobic002G183900--Sobic002G404800 Sobic007G105500 Sobic007G105500 Sobic002G183900--Sobic007G105500 Sobic001G011400--Sobic010G173400 Sobic001G011400--Sobic003G409700 Sobic007G140700 Sobic007G140700 Sobic001G011400--Sobic007G140700 Sobic002G028400 Sobic002G028400 Sobic001G011400--Sobic002G028400 Sobic001G011400--Sobic001G073300 Sobic001G011400--Sobic001G540600 Sobic001G011400--Sobic003G042900 Sobic006G161500 Sobic006G161500 Sobic001G011400--Sobic006G161500 Sobic003G271400 Sobic003G271400 Sobic001G011400--Sobic003G271400
Octagon: transcription factors


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