Gene annotation
Transcriptome id Sobic.003G391600.1
Synonym Sb03g042910
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AMP-binding domain containing protein, expressed
UniProt C5XFF3
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF234
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G63380 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os01g67540.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051453 , Zm00025a039439 , Zm00025a027433
Brachypodium KQK11060
Barley HORVU3Hr1G089000.2 , HORVU3Hr1G089000.1 , HORVU3Hr1G089000.4 , HORVU3Hr1G089000.5
Wheat TraesCS3A02G394200 , TraesCS3A02G394200 , TraesCS3D02G388100 , TraesCS3A02G394300 , TraesCS3B02G426200 , TraesCS3D02G388000 , TraesCS3D02G388000 , TraesCS3B02G426300
Populus -


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cDNA sequences
Sobic.003G391600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
2 Sobic.003G318300 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.005G039700 rhoGAP domain containing protein, expressed -
4 Sobic.002G220900 expressed protein -
5 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
6 Sobic.004G151800 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
7 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
8 Sobic.004G154200 expressed protein -
9 Sobic.002G186400 OsFBX323 - F-box domain containing protein, expressed -
10 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.004G125700 isochorismatase family protein, putative, expressed -
12 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
13 Sobic.001G132600 histidine acid phosphatase, putative, expressed K13024: PPIP5K, inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase
14 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
15 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
16 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
17 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
18 Sobic.003G027500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
19 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
20 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic003G391600 Sobic003G391600 Sobic002G324500 Sobic002G324500 Sobic003G391600--Sobic002G324500 Sobic003G318300 Sobic003G318300 Sobic003G391600--Sobic003G318300 Sobic005G039700 Sobic005G039700 Sobic003G391600--Sobic005G039700 Sobic002G220900 Sobic002G220900 Sobic003G391600--Sobic002G220900 Sobic006G120500 Sobic006G120500 Sobic003G391600--Sobic006G120500 Sobic004G151800 Sobic004G151800 Sobic003G391600--Sobic004G151800 Sobic003G042900 Sobic003G042900 Sobic003G391600--Sobic003G042900 Sobic004G154200 Sobic004G154200 Sobic003G391600--Sobic004G154200 Sobic002G186400 Sobic002G186400 Sobic003G391600--Sobic002G186400 Sobic003G367500 Sobic003G367500 Sobic002G324500--Sobic003G367500 Sobic003G234200 Sobic003G234200 Sobic002G324500--Sobic003G234200 Sobic008G117000 Sobic008G117000 Sobic002G324500--Sobic008G117000 Sobic003G431900 Sobic003G431900 Sobic002G324500--Sobic003G431900 Sobic004G215800 Sobic004G215800 Sobic002G324500--Sobic004G215800 Sobic003G256700 Sobic003G256700 Sobic002G324500--Sobic003G256700 Sobic007G009200 Sobic007G009200 Sobic002G324500--Sobic007G009200 Sobic003G024300 Sobic003G024300 Sobic002G324500--Sobic003G024300 Sobic005G089600 Sobic005G089600 Sobic002G324500--Sobic005G089600 Sobic003G318300--Sobic002G220900 Sobic003G318300--Sobic007G009200 Sobic003G398800 Sobic003G398800 Sobic003G318300--Sobic003G398800 Sobic010G214100 Sobic010G214100 Sobic003G318300--Sobic010G214100 Sobic003G318300--Sobic003G024300 Sobic006G077400 Sobic006G077400 Sobic003G318300--Sobic006G077400 Sobic010G035400 Sobic010G035400 Sobic003G318300--Sobic010G035400 Sobic007G225500 Sobic007G225500 Sobic003G318300--Sobic007G225500 Sobic003G318300--Sobic002G324500 Sobic002G219300 Sobic002G219300 Sobic005G039700--Sobic002G219300 Sobic004G312800 Sobic004G312800 Sobic005G039700--Sobic004G312800 Sobic002G402700 Sobic002G402700 Sobic005G039700--Sobic002G402700 Sobic005G039700--Sobic003G391600 Sobic005G039700--Sobic003G042900 Sobic010G173400 Sobic010G173400 Sobic005G039700--Sobic010G173400 Sobic002G314400 Sobic002G314400 Sobic005G039700--Sobic002G314400 Sobic002G183900 Sobic002G183900 Sobic005G039700--Sobic002G183900 Sobic001G011400 Sobic001G011400 Sobic005G039700--Sobic001G011400 Sobic002G220900--Sobic003G398800 Sobic008G033000 Sobic008G033000 Sobic002G220900--Sobic008G033000 Sobic007G103400 Sobic007G103400 Sobic002G220900--Sobic007G103400 Sobic001G504400 Sobic001G504400 Sobic002G220900--Sobic001G504400 Sobic002G220900--Sobic007G009200 Sobic009G237100 Sobic009G237100 Sobic002G220900--Sobic009G237100 Sobic003G185900 Sobic003G185900 Sobic002G220900--Sobic003G185900 Sobic005G204200 Sobic005G204200 Sobic002G220900--Sobic005G204200 Sobic002G220900--Sobic010G035400 Sobic004G317500 Sobic004G317500 Sobic006G120500--Sobic004G317500 Sobic008G033200 Sobic008G033200 Sobic006G120500--Sobic008G033200 Sobic006G120500--Sobic002G324500 Sobic005G001700 Sobic005G001700 Sobic006G120500--Sobic005G001700 Sobic004G027600 Sobic004G027600 Sobic006G120500--Sobic004G027600 Sobic002G403600 Sobic002G403600 Sobic006G120500--Sobic002G403600 Sobic003G036200 Sobic003G036200 Sobic006G120500--Sobic003G036200 Sobic006G064100 Sobic006G064100 Sobic006G120500--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic006G120500--Sobic010G085100 Sobic001G345100 Sobic001G345100 Sobic004G151800--Sobic001G345100 Sobic001G132600 Sobic001G132600 Sobic004G151800--Sobic001G132600 Sobic006G153400 Sobic006G153400 Sobic004G151800--Sobic006G153400 Sobic004G082300 Sobic004G082300 Sobic004G151800--Sobic004G082300 Sobic004G143300 Sobic004G143300 Sobic004G151800--Sobic004G143300 Sobic001G178250 Sobic001G178250 Sobic004G151800--Sobic001G178250 Sobic009G256100 Sobic009G256100 Sobic004G151800--Sobic009G256100 Sobic003G127800 Sobic003G127800 Sobic004G151800--Sobic003G127800 Sobic007G006400 Sobic007G006400 Sobic004G151800--Sobic007G006400 Sobic002G404800 Sobic002G404800 Sobic003G042900--Sobic002G404800 Sobic002G390100 Sobic002G390100 Sobic003G042900--Sobic002G390100 Sobic001G073300 Sobic001G073300 Sobic003G042900--Sobic001G073300 Sobic003G042900--Sobic009G256100 Sobic004G165500 Sobic004G165500 Sobic003G042900--Sobic004G165500 Sobic010G104800 Sobic010G104800 Sobic003G042900--Sobic010G104800 Sobic003G042900--Sobic004G215800 Sobic003G042900--Sobic008G033000 Sobic008G129900 Sobic008G129900 Sobic003G042900--Sobic008G129900 Sobic004G154200--Sobic003G367500 Sobic004G154200--Sobic003G185900 Sobic004G154200--Sobic003G398800 Sobic007G105500 Sobic007G105500 Sobic004G154200--Sobic007G105500 Sobic010G067100 Sobic010G067100 Sobic004G154200--Sobic010G067100 Sobic005G231500 Sobic005G231500 Sobic004G154200--Sobic005G231500 Sobic004G154200--Sobic010G085100 Sobic004G154200--Sobic003G127800 Sobic001G329400 Sobic001G329400 Sobic004G154200--Sobic001G329400 Sobic001G244700 Sobic001G244700 Sobic002G186400--Sobic001G244700 Sobic008G140200 Sobic008G140200 Sobic002G186400--Sobic008G140200 Sobic002G186400--Sobic010G085100 Sobic006G089500 Sobic006G089500 Sobic002G186400--Sobic006G089500 Sobic002G186400--Sobic004G143300 Sobic002G186400--Sobic003G391600 Sobic009G246300 Sobic009G246300 Sobic002G186400--Sobic009G246300 Sobic002G186400--Sobic002G219300 Sobic003G372400 Sobic003G372400 Sobic002G186400--Sobic003G372400
Octagon: transcription factors


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