Gene annotation
Transcriptome id Sobic.003G027500.2,Sobic.003G027500.1
Synonym Sb03g002580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein kinase domain containing protein, expressed
UniProt C5XL91
Pfam PF07714
Panther DB PTHR23257 PTHR23257:SF501
NCBI CDD KOG0192; Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G58950 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os01g10450.2 : protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035857 , Zm00025a022974
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
2 Sobic.003G391600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding domain containing protein, expressed -
3 Sobic.001G536600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@paramyosin, putative, expressed -
4 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
5 Sobic.004G151800 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
6 Sobic.002G181700 metallo-beta-lactamase family protein, putative, expressed -
7 Sobic.010G007300 hydrolase activity(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase activity(PubMedID : 24655390)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
8 Sobic.008G173800 K+ efflux antiporter 3(PubMedID : 26465154)@potasium efflux antiporter protein, putative, expressed -
9 Sobic.003G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX5 - F-box domain containing protein, expressed -
10 Sobic.001G132600 histidine acid phosphatase, putative, expressed K13024: PPIP5K, inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase
11 Sobic.010G227900 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.004G069000 expressed protein -
13 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
14 Sobic.007G007200 - -
15 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
16 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
17 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G270000 expressed protein -
19 Sobic.001G135400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@GATA transcription factor 25, putative, expressed -
20 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic003G027500 Sobic003G027500 Sobic002G310900 Sobic002G310900 Sobic003G027500--Sobic002G310900 Sobic003G391600 Sobic003G391600 Sobic003G027500--Sobic003G391600 Sobic001G536600 Sobic001G536600 Sobic003G027500--Sobic001G536600 Sobic002G307800 Sobic002G307800 Sobic003G027500--Sobic002G307800 Sobic004G151800 Sobic004G151800 Sobic003G027500--Sobic004G151800 Sobic002G181700 Sobic002G181700 Sobic003G027500--Sobic002G181700 Sobic010G007300 Sobic010G007300 Sobic003G027500--Sobic010G007300 Sobic008G173800 Sobic008G173800 Sobic003G027500--Sobic008G173800 Sobic003G134300 Sobic003G134300 Sobic003G027500--Sobic003G134300 Sobic003G010800 Sobic003G010800 Sobic002G310900--Sobic003G010800 Sobic003G403300 Sobic003G403300 Sobic002G310900--Sobic003G403300 Sobic002G310900--Sobic002G307800 Sobic010G134000 Sobic010G134000 Sobic002G310900--Sobic010G134000 Sobic006G270000 Sobic006G270000 Sobic002G310900--Sobic006G270000 Sobic002G310900--Sobic003G027500 Sobic002G407000 Sobic002G407000 Sobic002G310900--Sobic002G407000 Sobic010G165000 Sobic010G165000 Sobic002G310900--Sobic010G165000 Sobic003G433400 Sobic003G433400 Sobic002G310900--Sobic003G433400 Sobic002G324500 Sobic002G324500 Sobic003G391600--Sobic002G324500 Sobic003G318300 Sobic003G318300 Sobic003G391600--Sobic003G318300 Sobic005G039700 Sobic005G039700 Sobic003G391600--Sobic005G039700 Sobic002G220900 Sobic002G220900 Sobic003G391600--Sobic002G220900 Sobic006G120500 Sobic006G120500 Sobic003G391600--Sobic006G120500 Sobic003G391600--Sobic004G151800 Sobic003G042900 Sobic003G042900 Sobic003G391600--Sobic003G042900 Sobic004G154200 Sobic004G154200 Sobic003G391600--Sobic004G154200 Sobic002G186400 Sobic002G186400 Sobic003G391600--Sobic002G186400 Sobic001G536600--Sobic003G027500 Sobic001G536600--Sobic002G310900 Sobic001G331500 Sobic001G331500 Sobic001G536600--Sobic001G331500 Sobic001G536600--Sobic003G391600 Sobic001G135400 Sobic001G135400 Sobic001G536600--Sobic001G135400 Sobic010G034600 Sobic010G034600 Sobic001G536600--Sobic010G034600 Sobic008G032300 Sobic008G032300 Sobic001G536600--Sobic008G032300 Sobic010G227900 Sobic010G227900 Sobic001G536600--Sobic010G227900 Sobic010G261400 Sobic010G261400 Sobic001G536600--Sobic010G261400 Sobic009G217400 Sobic009G217400 Sobic002G307800--Sobic009G217400 Sobic006G250800 Sobic006G250800 Sobic002G307800--Sobic006G250800 Sobic002G307800--Sobic002G310900 Sobic002G307800--Sobic003G403300 Sobic002G307800--Sobic003G010800 Sobic003G198900 Sobic003G198900 Sobic002G307800--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic002G307800--Sobic004G302800 Sobic002G307800--Sobic010G007300 Sobic002G307800--Sobic003G433400 Sobic001G345100 Sobic001G345100 Sobic004G151800--Sobic001G345100 Sobic001G132600 Sobic001G132600 Sobic004G151800--Sobic001G132600 Sobic006G153400 Sobic006G153400 Sobic004G151800--Sobic006G153400 Sobic004G082300 Sobic004G082300 Sobic004G151800--Sobic004G082300 Sobic004G143300 Sobic004G143300 Sobic004G151800--Sobic004G143300 Sobic001G178250 Sobic001G178250 Sobic004G151800--Sobic001G178250 Sobic009G256100 Sobic009G256100 Sobic004G151800--Sobic009G256100 Sobic003G127800 Sobic003G127800 Sobic004G151800--Sobic003G127800 Sobic007G006400 Sobic007G006400 Sobic004G151800--Sobic007G006400 Sobic009G026300 Sobic009G026300 Sobic002G181700--Sobic009G026300 Sobic001G253300 Sobic001G253300 Sobic002G181700--Sobic001G253300 Sobic002G181700--Sobic003G027500 Sobic002G181700--Sobic003G433400 Sobic001G188400 Sobic001G188400 Sobic002G181700--Sobic001G188400 Sobic003G173600 Sobic003G173600 Sobic002G181700--Sobic003G173600 Sobic002G181700--Sobic009G217400 Sobic010G098866 Sobic010G098866 Sobic002G181700--Sobic010G098866 Sobic002G181700--Sobic006G270000 Sobic004G285700 Sobic004G285700 Sobic010G007300--Sobic004G285700 Sobic010G007300--Sobic002G307800 Sobic010G007300--Sobic002G310900 Sobic010G007300--Sobic003G403300 Sobic010G007300--Sobic006G250800 Sobic010G225801 Sobic010G225801 Sobic010G007300--Sobic010G225801 Sobic010G007300--Sobic004G151800 Sobic003G150500 Sobic003G150500 Sobic010G007300--Sobic003G150500 Sobic002G252300 Sobic002G252300 Sobic010G007300--Sobic002G252300 Sobic004G046500 Sobic004G046500 Sobic008G173800--Sobic004G046500 Sobic006G161500 Sobic006G161500 Sobic008G173800--Sobic006G161500 Sobic006G235400 Sobic006G235400 Sobic008G173800--Sobic006G235400 Sobic009G194500 Sobic009G194500 Sobic008G173800--Sobic009G194500 Sobic003G409700 Sobic003G409700 Sobic008G173800--Sobic003G409700 Sobic010G231300 Sobic010G231300 Sobic008G173800--Sobic010G231300 Sobic003G341300 Sobic003G341300 Sobic008G173800--Sobic003G341300 Sobic001G073300 Sobic001G073300 Sobic008G173800--Sobic001G073300 Sobic007G227100 Sobic007G227100 Sobic008G173800--Sobic007G227100 Sobic003G134300--Sobic004G302800 Sobic004G213300 Sobic004G213300 Sobic003G134300--Sobic004G213300 Sobic003G134300--Sobic003G198900 Sobic002G098900 Sobic002G098900 Sobic003G134300--Sobic002G098900 Sobic003G250400 Sobic003G250400 Sobic003G134300--Sobic003G250400 Sobic003G134300--Sobic003G403300 Sobic003G134300--Sobic002G307800 Sobic002G376600 Sobic002G376600 Sobic003G134300--Sobic002G376600 Sobic003G086300 Sobic003G086300 Sobic003G134300--Sobic003G086300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.