Gene annotation
Transcriptome id Sobic.001G135400.1
Synonym GATA24, Sb01g011840, JAZ, TIFY2B, ZML1
Functional annotation tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
GATA transcription factor 25, putative, expressed
UniProt C5WPL5
Pfam PF06200 PF00320 PF06203
Panther DB PTHR10071 PTHR10071:SF168
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G21175 : ZIM-like 1
RAP-DB (Rice) LOC_Os03g47970.1 : GATA transcription factor 25, putative, expressed
MaizeGDB (Corn) Zm00025a007610
Brachypodium KQK13765
Barley HORVU4Hr1G004080.25 , HORVU4Hr1G004080.24 , HORVU4Hr1G004080.29 , HORVU4Hr1G004080.28 , HORVU4Hr1G004080.18 , HORVU4Hr1G004080.19 , HORVU4Hr1G004080.14 , HORVU4Hr1G004080.15 , HORVU4Hr1G004080.16 , HORVU4Hr1G004080.17 , HORVU4Hr1G004080.10 , HORVU4Hr1G004080.11 , HORVU4Hr1G004080.12 , HORVU4Hr1G004080.13 , HORVU4Hr1G004080.21 , HORVU4Hr1G004080.20 , HORVU4Hr1G004080.23 , HORVU4Hr1G004080.22 , HORVU4Hr1G004080.27 , HORVU4Hr1G004080.26 , HORVU4Hr1G004080.32 , HORVU4Hr1G004080.30 , HORVU4Hr1G004080.31 , HORVU4Hr1G004080.6 , HORVU4Hr1G004080.7 , HORVU4Hr1G004080.4 , HORVU4Hr1G004080.5 , HORVU4Hr1G004080.2 , HORVU4Hr1G004080.3 , HORVU4Hr1G004080.1 , HORVU4Hr1G004080.8 , HORVU4Hr1G004080.9
Wheat TraesCS4A02G285900 , TraesCS4A02G285900 , TraesCS4A02G285900
Populus -


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cDNA sequences
Sobic.001G135400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G069000 expressed protein -
2 Sobic.004G154200 expressed protein -
3 Sobic.010G255300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
4 Sobic.003G028900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.009G015100 ACT domain containing protein, expressed -
7 Sobic.003G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cation efflux family protein, putative, expressed -
8 Sobic.001G528800 cell cycle control protein, putative, expressed -
9 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
10 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
11 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
12 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
13 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
14 Sobic.001G468700 expressed protein -
15 Sobic.003G391600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding domain containing protein, expressed -
16 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
17 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
18 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
19 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
20 Sobic.002G152600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22


Gene co-expression network
sample Sobic001G135400 Sobic001G135400 Sobic004G069000 Sobic004G069000 Sobic001G135400--Sobic004G069000 Sobic004G154200 Sobic004G154200 Sobic001G135400--Sobic004G154200 Sobic010G255300 Sobic010G255300 Sobic001G135400--Sobic010G255300 Sobic003G028900 Sobic003G028900 Sobic001G135400--Sobic003G028900 Sobic007G105500 Sobic007G105500 Sobic001G135400--Sobic007G105500 Sobic009G015100 Sobic009G015100 Sobic001G135400--Sobic009G015100 Sobic003G086300 Sobic003G086300 Sobic001G135400--Sobic003G086300 Sobic001G528800 Sobic001G528800 Sobic001G135400--Sobic001G528800 Sobic002G310900 Sobic002G310900 Sobic001G135400--Sobic002G310900 Sobic003G271400 Sobic003G271400 Sobic004G069000--Sobic003G271400 Sobic004G069000--Sobic001G528800 Sobic001G345100 Sobic001G345100 Sobic004G069000--Sobic001G345100 Sobic008G033000 Sobic008G033000 Sobic004G069000--Sobic008G033000 Sobic005G206500 Sobic005G206500 Sobic004G069000--Sobic005G206500 Sobic010G085100 Sobic010G085100 Sobic004G069000--Sobic010G085100 Sobic007G136200 Sobic007G136200 Sobic004G069000--Sobic007G136200 Sobic001G536700 Sobic001G536700 Sobic004G069000--Sobic001G536700 Sobic001G378100 Sobic001G378100 Sobic004G069000--Sobic001G378100 Sobic003G367500 Sobic003G367500 Sobic004G154200--Sobic003G367500 Sobic003G185900 Sobic003G185900 Sobic004G154200--Sobic003G185900 Sobic003G398800 Sobic003G398800 Sobic004G154200--Sobic003G398800 Sobic004G154200--Sobic007G105500 Sobic010G067100 Sobic010G067100 Sobic004G154200--Sobic010G067100 Sobic005G231500 Sobic005G231500 Sobic004G154200--Sobic005G231500 Sobic004G154200--Sobic010G085100 Sobic003G127800 Sobic003G127800 Sobic004G154200--Sobic003G127800 Sobic001G329400 Sobic001G329400 Sobic004G154200--Sobic001G329400 Sobic010G255300--Sobic007G105500 Sobic010G249700 Sobic010G249700 Sobic010G255300--Sobic010G249700 Sobic010G255300--Sobic009G015100 Sobic005G101200 Sobic005G101200 Sobic010G255300--Sobic005G101200 Sobic010G255300--Sobic003G367500 Sobic002G404800 Sobic002G404800 Sobic010G255300--Sobic002G404800 Sobic005G206300 Sobic005G206300 Sobic010G255300--Sobic005G206300 Sobic004G356400 Sobic004G356400 Sobic010G255300--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic010G255300--Sobic003G036200 Sobic002G306800 Sobic002G306800 Sobic003G028900--Sobic002G306800 Sobic002G382700 Sobic002G382700 Sobic003G028900--Sobic002G382700 Sobic001G207800 Sobic001G207800 Sobic003G028900--Sobic001G207800 Sobic003G028900--Sobic004G356400 Sobic003G028900--Sobic007G136200 Sobic001G303200 Sobic001G303200 Sobic003G028900--Sobic001G303200 Sobic003G028900--Sobic005G206500 Sobic003G028900--Sobic010G249700 Sobic001G258200 Sobic001G258200 Sobic003G028900--Sobic001G258200 Sobic004G215800 Sobic004G215800 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic009G256100 Sobic009G256100 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic009G015100--Sobic007G105500 Sobic009G015100--Sobic005G231500 Sobic009G015100--Sobic005G206300 Sobic009G015100--Sobic010G255300 Sobic004G281800 Sobic004G281800 Sobic009G015100--Sobic004G281800 Sobic009G015100--Sobic005G101200 Sobic009G015100--Sobic010G085100 Sobic009G015100--Sobic002G404800 Sobic009G015100--Sobic004G356400 Sobic003G243800 Sobic003G243800 Sobic003G086300--Sobic003G243800 Sobic009G217400 Sobic009G217400 Sobic003G086300--Sobic009G217400 Sobic001G253300 Sobic001G253300 Sobic003G086300--Sobic001G253300 Sobic004G213300 Sobic004G213300 Sobic003G086300--Sobic004G213300 Sobic003G250400 Sobic003G250400 Sobic003G086300--Sobic003G250400 Sobic007G182000 Sobic007G182000 Sobic003G086300--Sobic007G182000 Sobic002G307800 Sobic002G307800 Sobic003G086300--Sobic002G307800 Sobic001G475300 Sobic001G475300 Sobic003G086300--Sobic001G475300 Sobic006G250800 Sobic006G250800 Sobic003G086300--Sobic006G250800 Sobic001G528800--Sobic004G069000 Sobic001G198400 Sobic001G198400 Sobic001G528800--Sobic001G198400 Sobic001G528800--Sobic001G378100 Sobic001G530900 Sobic001G530900 Sobic001G528800--Sobic001G530900 Sobic010G002700 Sobic010G002700 Sobic001G528800--Sobic010G002700 Sobic001G528800--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic001G528800--Sobic004G143300 Sobic001G528800--Sobic008G033000 Sobic004G042200 Sobic004G042200 Sobic001G528800--Sobic004G042200 Sobic003G010800 Sobic003G010800 Sobic002G310900--Sobic003G010800 Sobic003G403300 Sobic003G403300 Sobic002G310900--Sobic003G403300 Sobic002G310900--Sobic002G307800 Sobic010G134000 Sobic010G134000 Sobic002G310900--Sobic010G134000 Sobic006G270000 Sobic006G270000 Sobic002G310900--Sobic006G270000 Sobic003G027500 Sobic003G027500 Sobic002G310900--Sobic003G027500 Sobic002G407000 Sobic002G407000 Sobic002G310900--Sobic002G407000 Sobic010G165000 Sobic010G165000 Sobic002G310900--Sobic010G165000 Sobic003G433400 Sobic003G433400 Sobic002G310900--Sobic003G433400
Octagon: transcription factors


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