Gene annotation
Transcriptome id Sobic.010G007300.1
Synonym Sb10g000890
Functional annotation hydrolase activity (PubMedID : 24655390)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
hydrolase activity (PubMedID : 24655390)
haloacid dehalogenase-like hydrolase family protein, putative, expressed
UniProt C5Z2P4
Pfam PF13419
Panther DB PTHR18901 PTHR18901:SF43
NCBI CDD KOG2914; Predicted haloacid-halidohydrolase and related hydrolases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38740 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os09g24230.1 : haloacid dehalogenase-like hydrolase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a050288
Brachypodium PNT76706
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G007300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G285700 expressed protein -
2 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
3 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
4 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
5 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.010G225801 - -
7 Sobic.004G151800 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
8 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
9 Sobic.002G252300 expressed protein -
10 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
11 Sobic.001G391200 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
12 Sobic.001G095000 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
13 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
14 Sobic.002G047500 galactose-1-phosphate uridyl transferase, putative, expressed K00965: galT, UDPglucose--hexose-1-phosphate uridylyltransferase
15 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
16 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
17 Sobic.002G196200 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
18 Sobic.002G335000 UPF0041 domain containing protein, putative, expressed -
19 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
20 Sobic.005G206500 sodium/calcium exchanger protein, putative, expressed K03452: magnesium/proton exchanger


Gene co-expression network
sample Sobic010G007300 Sobic010G007300 Sobic004G285700 Sobic004G285700 Sobic010G007300--Sobic004G285700 Sobic002G307800 Sobic002G307800 Sobic010G007300--Sobic002G307800 Sobic002G310900 Sobic002G310900 Sobic010G007300--Sobic002G310900 Sobic003G403300 Sobic003G403300 Sobic010G007300--Sobic003G403300 Sobic006G250800 Sobic006G250800 Sobic010G007300--Sobic006G250800 Sobic010G225801 Sobic010G225801 Sobic010G007300--Sobic010G225801 Sobic004G151800 Sobic004G151800 Sobic010G007300--Sobic004G151800 Sobic003G150500 Sobic003G150500 Sobic010G007300--Sobic003G150500 Sobic002G252300 Sobic002G252300 Sobic010G007300--Sobic002G252300 Sobic004G285700--Sobic010G007300 Sobic007G032000 Sobic007G032000 Sobic004G285700--Sobic007G032000 Sobic001G188400 Sobic001G188400 Sobic004G285700--Sobic001G188400 Sobic003G198900 Sobic003G198900 Sobic004G285700--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic004G285700--Sobic004G302800 Sobic006G115100 Sobic006G115100 Sobic004G285700--Sobic006G115100 Sobic001G391200 Sobic001G391200 Sobic004G285700--Sobic001G391200 Sobic001G095000 Sobic001G095000 Sobic004G285700--Sobic001G095000 Sobic004G285700--Sobic002G307800 Sobic009G217400 Sobic009G217400 Sobic002G307800--Sobic009G217400 Sobic002G307800--Sobic006G250800 Sobic002G307800--Sobic002G310900 Sobic002G307800--Sobic003G403300 Sobic003G010800 Sobic003G010800 Sobic002G307800--Sobic003G010800 Sobic002G307800--Sobic003G198900 Sobic002G307800--Sobic004G302800 Sobic002G307800--Sobic010G007300 Sobic003G433400 Sobic003G433400 Sobic002G307800--Sobic003G433400 Sobic002G310900--Sobic003G010800 Sobic002G310900--Sobic003G403300 Sobic002G310900--Sobic002G307800 Sobic010G134000 Sobic010G134000 Sobic002G310900--Sobic010G134000 Sobic006G270000 Sobic006G270000 Sobic002G310900--Sobic006G270000 Sobic003G027500 Sobic003G027500 Sobic002G310900--Sobic003G027500 Sobic002G407000 Sobic002G407000 Sobic002G310900--Sobic002G407000 Sobic010G165000 Sobic010G165000 Sobic002G310900--Sobic010G165000 Sobic002G310900--Sobic003G433400 Sobic003G403300--Sobic002G310900 Sobic003G403300--Sobic003G010800 Sobic003G403300--Sobic002G307800 Sobic002G098900 Sobic002G098900 Sobic003G403300--Sobic002G098900 Sobic003G403300--Sobic002G407000 Sobic003G403300--Sobic010G134000 Sobic001G067700 Sobic001G067700 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G403300--Sobic003G198900 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic006G250800--Sobic002G084800 Sobic009G116900 Sobic009G116900 Sobic006G250800--Sobic009G116900 Sobic007G087000 Sobic007G087000 Sobic006G250800--Sobic007G087000 Sobic001G253300 Sobic001G253300 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100 Sobic010G225801--Sobic010G007300 Sobic003G391900 Sobic003G391900 Sobic010G225801--Sobic003G391900 Sobic010G225801--Sobic001G391200 Sobic003G370500 Sobic003G370500 Sobic010G225801--Sobic003G370500 Sobic010G225801--Sobic004G285700 Sobic002G194000 Sobic002G194000 Sobic010G225801--Sobic002G194000 Sobic006G254100 Sobic006G254100 Sobic010G225801--Sobic006G254100 Sobic001G460600 Sobic001G460600 Sobic010G225801--Sobic001G460600 Sobic005G019100 Sobic005G019100 Sobic010G225801--Sobic005G019100 Sobic001G345100 Sobic001G345100 Sobic004G151800--Sobic001G345100 Sobic001G132600 Sobic001G132600 Sobic004G151800--Sobic001G132600 Sobic006G153400 Sobic006G153400 Sobic004G151800--Sobic006G153400 Sobic004G082300 Sobic004G082300 Sobic004G151800--Sobic004G082300 Sobic004G143300 Sobic004G143300 Sobic004G151800--Sobic004G143300 Sobic001G178250 Sobic001G178250 Sobic004G151800--Sobic001G178250 Sobic009G256100 Sobic009G256100 Sobic004G151800--Sobic009G256100 Sobic003G127800 Sobic003G127800 Sobic004G151800--Sobic003G127800 Sobic007G006400 Sobic007G006400 Sobic004G151800--Sobic007G006400 Sobic002G043800 Sobic002G043800 Sobic003G150500--Sobic002G043800 Sobic003G298200 Sobic003G298200 Sobic003G150500--Sobic003G298200 Sobic003G107500 Sobic003G107500 Sobic003G150500--Sobic003G107500 Sobic010G150100 Sobic010G150100 Sobic003G150500--Sobic010G150100 Sobic001G282800 Sobic001G282800 Sobic003G150500--Sobic001G282800 Sobic001G411200 Sobic001G411200 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic004G151300 Sobic004G151300 Sobic003G150500--Sobic004G151300 Sobic004G086300 Sobic004G086300 Sobic003G150500--Sobic004G086300 Sobic002G252300--Sobic004G151800 Sobic002G252300--Sobic001G132600 Sobic002G252300--Sobic001G411200 Sobic004G206100 Sobic004G206100 Sobic002G252300--Sobic004G206100 Sobic002G252300--Sobic004G082300 Sobic002G252300--Sobic001G345100 Sobic004G268000 Sobic004G268000 Sobic002G252300--Sobic004G268000 Sobic010G101000 Sobic010G101000 Sobic002G252300--Sobic010G101000 Sobic008G149100 Sobic008G149100 Sobic002G252300--Sobic008G149100
Octagon: transcription factors


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