Gene annotation
Transcriptome id Sobic.002G196200.1
Synonym JAZ, JAZ9, TIFY7, Sb02g024270
Functional annotation tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
ZIM motif family protein, expressed
UniProt C5XC57
Pfam PF09425 PF06200
Panther DB PTHR33077 PTHR33077:SF18
NCBI CDD -
KEGG Orthology K13464; jasmonate ZIM domain-containing protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G70700 : TIFY domain/Divergent CCT motif family protein
RAP-DB (Rice) LOC_Os09g23660.1 : ZIM motif family protein, expressed
MaizeGDB (Corn) Zm00025a046906 , Zm00025a013876
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G196200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G298200 dehydrogenase, putative, expressed -
2 Sobic.001G310100 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
3 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
4 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
5 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
7 Sobic.002G376600 paramyosin, putative, expressed -
8 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
9 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.002G335000 UPF0041 domain containing protein, putative, expressed -
11 Sobic.001G095000 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
12 Sobic.007G099200 expressed protein -
13 Sobic.004G302800 MSP domain containing protein, expressed -
14 Sobic.010G149200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
15 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
16 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
17 Sobic.010G007300 hydrolase activity(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase activity(PubMedID : 24655390)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
18 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -
19 Sobic.010G226000 expressed protein -
20 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic002G196200 Sobic002G196200 Sobic003G298200 Sobic003G298200 Sobic002G196200--Sobic003G298200 Sobic001G310100 Sobic001G310100 Sobic002G196200--Sobic001G310100 Sobic003G107500 Sobic003G107500 Sobic002G196200--Sobic003G107500 Sobic003G373500 Sobic003G373500 Sobic002G196200--Sobic003G373500 Sobic003G150500 Sobic003G150500 Sobic002G196200--Sobic003G150500 Sobic003G403300 Sobic003G403300 Sobic002G196200--Sobic003G403300 Sobic002G376600 Sobic002G376600 Sobic002G196200--Sobic002G376600 Sobic002G341000 Sobic002G341000 Sobic002G196200--Sobic002G341000 Sobic006G250800 Sobic006G250800 Sobic002G196200--Sobic006G250800 Sobic010G150100 Sobic010G150100 Sobic003G298200--Sobic010G150100 Sobic004G086300 Sobic004G086300 Sobic003G298200--Sobic004G086300 Sobic003G298200--Sobic003G150500 Sobic003G298200--Sobic003G107500 Sobic003G105900 Sobic003G105900 Sobic003G298200--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic003G298200--Sobic005G201000 Sobic009G040400 Sobic009G040400 Sobic003G298200--Sobic009G040400 Sobic002G043800 Sobic002G043800 Sobic003G298200--Sobic002G043800 Sobic009G103000 Sobic009G103000 Sobic003G298200--Sobic009G103000 Sobic001G310100--Sobic003G107500 Sobic010G014100 Sobic010G014100 Sobic001G310100--Sobic010G014100 Sobic010G226000 Sobic010G226000 Sobic001G310100--Sobic010G226000 Sobic001G310100--Sobic002G196200 Sobic007G099200 Sobic007G099200 Sobic001G310100--Sobic007G099200 Sobic001G310100--Sobic003G298200 Sobic001G310100--Sobic002G043800 Sobic003G119700 Sobic003G119700 Sobic001G310100--Sobic003G119700 Sobic001G310100--Sobic003G150500 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G107500--Sobic003G298200 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic003G107500--Sobic010G014100 Sobic003G264100 Sobic003G264100 Sobic003G373500--Sobic003G264100 Sobic003G373500--Sobic003G107500 Sobic002G335000 Sobic002G335000 Sobic003G373500--Sobic002G335000 Sobic001G333100 Sobic001G333100 Sobic003G373500--Sobic001G333100 Sobic004G252900 Sobic004G252900 Sobic003G373500--Sobic004G252900 Sobic003G311900 Sobic003G311900 Sobic003G373500--Sobic003G311900 Sobic010G239900 Sobic010G239900 Sobic003G373500--Sobic010G239900 Sobic002G311100 Sobic002G311100 Sobic003G373500--Sobic002G311100 Sobic003G373500--Sobic010G226000 Sobic003G150500--Sobic002G043800 Sobic003G150500--Sobic003G298200 Sobic003G150500--Sobic003G107500 Sobic003G150500--Sobic010G150100 Sobic001G282800 Sobic001G282800 Sobic003G150500--Sobic001G282800 Sobic001G411200 Sobic001G411200 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic004G151300 Sobic004G151300 Sobic003G150500--Sobic004G151300 Sobic003G150500--Sobic004G086300 Sobic002G310900 Sobic002G310900 Sobic003G403300--Sobic002G310900 Sobic003G010800 Sobic003G010800 Sobic003G403300--Sobic003G010800 Sobic002G307800 Sobic002G307800 Sobic003G403300--Sobic002G307800 Sobic002G098900 Sobic002G098900 Sobic003G403300--Sobic002G098900 Sobic002G407000 Sobic002G407000 Sobic003G403300--Sobic002G407000 Sobic010G134000 Sobic010G134000 Sobic003G403300--Sobic010G134000 Sobic001G067700 Sobic001G067700 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G198900 Sobic003G198900 Sobic003G403300--Sobic003G198900 Sobic001G532600 Sobic001G532600 Sobic002G376600--Sobic001G532600 Sobic004G120100 Sobic004G120100 Sobic002G376600--Sobic004G120100 Sobic006G222600 Sobic006G222600 Sobic002G376600--Sobic006G222600 Sobic002G181600 Sobic002G181600 Sobic002G376600--Sobic002G181600 Sobic001G198400 Sobic001G198400 Sobic002G376600--Sobic001G198400 Sobic002G376600--Sobic002G098900 Sobic004G163800 Sobic004G163800 Sobic002G376600--Sobic004G163800 Sobic001G136800 Sobic001G136800 Sobic002G376600--Sobic001G136800 Sobic002G376600--Sobic002G335000 Sobic002G341000--Sobic004G151300 Sobic004G169000 Sobic004G169000 Sobic002G341000--Sobic004G169000 Sobic003G271400 Sobic003G271400 Sobic002G341000--Sobic003G271400 Sobic006G257800 Sobic006G257800 Sobic002G341000--Sobic006G257800 Sobic003G191700 Sobic003G191700 Sobic002G341000--Sobic003G191700 Sobic008G167600 Sobic008G167600 Sobic002G341000--Sobic008G167600 Sobic001G207800 Sobic001G207800 Sobic002G341000--Sobic001G207800 Sobic004G312600 Sobic004G312600 Sobic002G341000--Sobic004G312600 Sobic003G264800 Sobic003G264800 Sobic002G341000--Sobic003G264800 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic001G188400 Sobic001G188400 Sobic006G250800--Sobic001G188400 Sobic009G217400 Sobic009G217400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic006G250800--Sobic002G084800 Sobic009G116900 Sobic009G116900 Sobic006G250800--Sobic009G116900 Sobic007G087000 Sobic007G087000 Sobic006G250800--Sobic007G087000 Sobic001G253300 Sobic001G253300 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100
Octagon: transcription factors


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