Gene annotation
Transcriptome id Sobic.001G310100.1,Sobic.001G310100.2
Synonym Sb01g030230
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5S8Z8 , A0A1B6QM39
Pfam PF00400
Panther DB PTHR15574 PTHR15574:SF32
NCBI CDD KOG1334; WD40 repeat protein
KEGG Orthology K11804; DDB1- and CUL4-associated factor 8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G35140 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os10g39760.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052275
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G310100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
2 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
3 Sobic.010G226000 expressed protein -
4 Sobic.002G196200 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
5 Sobic.007G099200 expressed protein -
6 Sobic.003G298200 dehydrogenase, putative, expressed -
7 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
8 Sobic.003G119700 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.001G492300 OsPP2Ac-5 - Phosphatase 2A isoform 5 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
11 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
12 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
13 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
14 Sobic.002G306100 ubiquinol-cytochrome C chaperone family protein, putative, expressed K17662: CBP3, cytochrome b pre-mRNA-processing protein 3
15 Sobic.010G275400 expressed protein -
16 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4
17 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
18 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
19 Sobic.002G079000 expressed protein -
20 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1


Gene co-expression network
sample Sobic001G310100 Sobic001G310100 Sobic003G107500 Sobic003G107500 Sobic001G310100--Sobic003G107500 Sobic010G014100 Sobic010G014100 Sobic001G310100--Sobic010G014100 Sobic010G226000 Sobic010G226000 Sobic001G310100--Sobic010G226000 Sobic002G196200 Sobic002G196200 Sobic001G310100--Sobic002G196200 Sobic007G099200 Sobic007G099200 Sobic001G310100--Sobic007G099200 Sobic003G298200 Sobic003G298200 Sobic001G310100--Sobic003G298200 Sobic002G043800 Sobic002G043800 Sobic001G310100--Sobic002G043800 Sobic003G119700 Sobic003G119700 Sobic001G310100--Sobic003G119700 Sobic003G150500 Sobic003G150500 Sobic001G310100--Sobic003G150500 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic003G107500--Sobic010G014100 Sobic010G014100--Sobic003G107500 Sobic002G211800 Sobic002G211800 Sobic010G014100--Sobic002G211800 Sobic001G128300 Sobic001G128300 Sobic010G014100--Sobic001G128300 Sobic010G014100--Sobic010G226000 Sobic010G014100--Sobic001G310100 Sobic002G344000 Sobic002G344000 Sobic010G014100--Sobic002G344000 Sobic001G100900 Sobic001G100900 Sobic010G014100--Sobic001G100900 Sobic001G389100 Sobic001G389100 Sobic010G014100--Sobic001G389100 Sobic002G213300 Sobic002G213300 Sobic010G014100--Sobic002G213300 Sobic001G451400 Sobic001G451400 Sobic010G226000--Sobic001G451400 Sobic009G256400 Sobic009G256400 Sobic010G226000--Sobic009G256400 Sobic004G209700 Sobic004G209700 Sobic010G226000--Sobic004G209700 Sobic009G165700 Sobic009G165700 Sobic010G226000--Sobic009G165700 Sobic003G166750 Sobic003G166750 Sobic010G226000--Sobic003G166750 Sobic001G441400 Sobic001G441400 Sobic010G226000--Sobic001G441400 Sobic001G457800 Sobic001G457800 Sobic010G226000--Sobic001G457800 Sobic001G111850 Sobic001G111850 Sobic010G226000--Sobic001G111850 Sobic003G444800 Sobic003G444800 Sobic010G226000--Sobic003G444800 Sobic002G196200--Sobic003G298200 Sobic002G196200--Sobic001G310100 Sobic002G196200--Sobic003G107500 Sobic002G196200--Sobic003G373500 Sobic002G196200--Sobic003G150500 Sobic003G403300 Sobic003G403300 Sobic002G196200--Sobic003G403300 Sobic002G376600 Sobic002G376600 Sobic002G196200--Sobic002G376600 Sobic002G341000 Sobic002G341000 Sobic002G196200--Sobic002G341000 Sobic006G250800 Sobic006G250800 Sobic002G196200--Sobic006G250800 Sobic007G099200--Sobic003G119700 Sobic007G099200--Sobic001G310100 Sobic007G223000 Sobic007G223000 Sobic007G099200--Sobic007G223000 Sobic009G066900 Sobic009G066900 Sobic007G099200--Sobic009G066900 Sobic007G099200--Sobic010G014100 Sobic008G124900 Sobic008G124900 Sobic007G099200--Sobic008G124900 Sobic001G059200 Sobic001G059200 Sobic007G099200--Sobic001G059200 Sobic003G150100 Sobic003G150100 Sobic007G099200--Sobic003G150100 Sobic002G358400 Sobic002G358400 Sobic007G099200--Sobic002G358400 Sobic010G150100 Sobic010G150100 Sobic003G298200--Sobic010G150100 Sobic004G086300 Sobic004G086300 Sobic003G298200--Sobic004G086300 Sobic003G298200--Sobic003G150500 Sobic003G298200--Sobic003G107500 Sobic003G105900 Sobic003G105900 Sobic003G298200--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic003G298200--Sobic005G201000 Sobic009G040400 Sobic009G040400 Sobic003G298200--Sobic009G040400 Sobic003G298200--Sobic002G043800 Sobic009G103000 Sobic009G103000 Sobic003G298200--Sobic009G103000 Sobic002G043800--Sobic010G150100 Sobic002G043800--Sobic003G107500 Sobic002G043800--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic002G043800--Sobic008G167600 Sobic004G151300 Sobic004G151300 Sobic002G043800--Sobic004G151300 Sobic002G043800--Sobic003G150500 Sobic004G312600 Sobic004G312600 Sobic002G043800--Sobic004G312600 Sobic003G271400 Sobic003G271400 Sobic002G043800--Sobic003G271400 Sobic002G295100 Sobic002G295100 Sobic002G043800--Sobic002G295100 Sobic003G119700--Sobic008G124900 Sobic001G294300 Sobic001G294300 Sobic003G119700--Sobic001G294300 Sobic006G131000 Sobic006G131000 Sobic003G119700--Sobic006G131000 Sobic007G093800 Sobic007G093800 Sobic003G119700--Sobic007G093800 Sobic003G119700--Sobic001G441400 Sobic001G096000 Sobic001G096000 Sobic003G119700--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic003G119700--Sobic010G278200 Sobic008G046500 Sobic008G046500 Sobic003G119700--Sobic008G046500 Sobic003G119700--Sobic001G451400 Sobic003G150500--Sobic002G043800 Sobic003G150500--Sobic003G298200 Sobic003G150500--Sobic003G107500 Sobic003G150500--Sobic010G150100 Sobic001G282800 Sobic001G282800 Sobic003G150500--Sobic001G282800 Sobic001G411200 Sobic001G411200 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic003G150500--Sobic004G151300 Sobic003G150500--Sobic004G086300
Octagon: transcription factors


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