Gene annotation
Transcriptome id Sobic.003G403300.1
Synonym ATSPS3F, SPS3F, SPS1;SPS1;SPS;SPS1, Sb03g043900
Functional annotation Sucrose phosphate synthase genes (PubMedID : 24456189)
"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum" (PubMedID : 26117170)
sucrose phosphate synthase (PubMedID : 26616172)
Sugar synthesis (PubMedID : 27330561)
sucrose-phosphate synthase, putative, expressed
UniProt C5XG93
Pfam PF00862 PF05116 PF00534
Panther DB PTHR12526 PTHR12526:SF360
NCBI CDD KOG0853; Glycosyltransferase
KEGG Orthology K00696; sucrose-phosphate synthase
Gene Ontology GO:0016157; sucrose synthase activity GO:0005985sucrose metabolic process


Orthologs (automatic annotation)
TAIR AT1G04920 : sucrose phosphate synthase 3F
RAP-DB (Rice) LOC_Os01g69030.2 : sucrose-phosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a017666 , Zm00025a039328 , Zm00025a026281
Brachypodium KQK11224
Barley HORVU3Hr1G093830.9 , HORVU3Hr1G093830.4 , HORVU3Hr1G093830.5 , HORVU3Hr1G093830.6 , HORVU3Hr1G093830.7 , HORVU3Hr1G093830.1 , HORVU3Hr1G093830.2 , HORVU3Hr1G093830.3 , HORVU3Hr1G093830.16 , HORVU3Hr1G093830.14 , HORVU3Hr1G093830.15 , HORVU3Hr1G093830.12 , HORVU3Hr1G093830.13 , HORVU3Hr1G093830.10 , HORVU3Hr1G093830.11
Wheat TraesCS3B02G461800 , TraesCS3A02G425500 , TraesCS3D02G420300
Populus -


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cDNA sequences
Sobic.003G403300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
2 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
3 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
4 Sobic.002G098900 phospholipase D, putative, expressed K01115: phospholipase D1/2
5 Sobic.002G407000 4-alpha-glucanotransferase, putative, expressed K00705: 4-alpha-glucanotransferase
6 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
7 Sobic.001G067700 amine oxidase-related, putative, expressed -
8 Sobic.002G069000 galactosyltransferase family protein, putative, expressed -
9 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
10 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
11 Sobic.004G302800 MSP domain containing protein, expressed -
12 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase
13 Sobic.006G270000 expressed protein -
14 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
15 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
16 Sobic.010G007300 hydrolase activity(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase activity(PubMedID : 24655390)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
17 Sobic.001G178100 inositol-1-monophosphatase, putative, expressed K10047: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase
18 Sobic.001G411200 cat eye syndrome critical region protein 5 precursor, putative, expressed -
19 Sobic.008G116700 expressed protein -
20 Sobic.007G076400 expressed protein -


Gene co-expression network
sample Sobic003G403300 Sobic003G403300 Sobic002G310900 Sobic002G310900 Sobic003G403300--Sobic002G310900 Sobic003G010800 Sobic003G010800 Sobic003G403300--Sobic003G010800 Sobic002G307800 Sobic002G307800 Sobic003G403300--Sobic002G307800 Sobic002G098900 Sobic002G098900 Sobic003G403300--Sobic002G098900 Sobic002G407000 Sobic002G407000 Sobic003G403300--Sobic002G407000 Sobic010G134000 Sobic010G134000 Sobic003G403300--Sobic010G134000 Sobic001G067700 Sobic001G067700 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G198900 Sobic003G198900 Sobic003G403300--Sobic003G198900 Sobic002G310900--Sobic003G010800 Sobic002G310900--Sobic003G403300 Sobic002G310900--Sobic002G307800 Sobic002G310900--Sobic010G134000 Sobic006G270000 Sobic006G270000 Sobic002G310900--Sobic006G270000 Sobic003G027500 Sobic003G027500 Sobic002G310900--Sobic003G027500 Sobic002G310900--Sobic002G407000 Sobic010G165000 Sobic010G165000 Sobic002G310900--Sobic010G165000 Sobic003G433400 Sobic003G433400 Sobic002G310900--Sobic003G433400 Sobic003G010800--Sobic010G134000 Sobic003G010800--Sobic006G270000 Sobic003G010800--Sobic002G310900 Sobic003G010800--Sobic003G433400 Sobic003G010800--Sobic003G403300 Sobic010G149800 Sobic010G149800 Sobic003G010800--Sobic010G149800 Sobic010G105000 Sobic010G105000 Sobic003G010800--Sobic010G105000 Sobic003G291800 Sobic003G291800 Sobic003G010800--Sobic003G291800 Sobic003G010800--Sobic002G307800 Sobic009G217400 Sobic009G217400 Sobic002G307800--Sobic009G217400 Sobic006G250800 Sobic006G250800 Sobic002G307800--Sobic006G250800 Sobic002G307800--Sobic002G310900 Sobic002G307800--Sobic003G403300 Sobic002G307800--Sobic003G010800 Sobic002G307800--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic002G307800--Sobic004G302800 Sobic010G007300 Sobic010G007300 Sobic002G307800--Sobic010G007300 Sobic002G307800--Sobic003G433400 Sobic002G098900--Sobic003G403300 Sobic002G098900--Sobic002G407000 Sobic002G098900--Sobic001G067700 Sobic001G198400 Sobic001G198400 Sobic002G098900--Sobic001G198400 Sobic002G376600 Sobic002G376600 Sobic002G098900--Sobic002G376600 Sobic003G092800 Sobic003G092800 Sobic002G098900--Sobic003G092800 Sobic008G069300 Sobic008G069300 Sobic002G098900--Sobic008G069300 Sobic002G098900--Sobic003G198900 Sobic003G134300 Sobic003G134300 Sobic002G098900--Sobic003G134300 Sobic001G201900 Sobic001G201900 Sobic002G407000--Sobic001G201900 Sobic007G113600 Sobic007G113600 Sobic002G407000--Sobic007G113600 Sobic001G178100 Sobic001G178100 Sobic002G407000--Sobic001G178100 Sobic001G411200 Sobic001G411200 Sobic002G407000--Sobic001G411200 Sobic002G407000--Sobic003G403300 Sobic002G407000--Sobic002G098900 Sobic002G407000--Sobic010G134000 Sobic002G407000--Sobic001G067700 Sobic002G407000--Sobic003G010800 Sobic010G134000--Sobic003G010800 Sobic010G134000--Sobic003G433400 Sobic010G134000--Sobic003G403300 Sobic010G134000--Sobic002G310900 Sobic010G134000--Sobic002G407000 Sobic010G134000--Sobic001G411200 Sobic010G134000--Sobic003G291800 Sobic010G134000--Sobic001G178100 Sobic010G134000--Sobic006G270000 Sobic001G067700--Sobic003G403300 Sobic001G067700--Sobic002G407000 Sobic001G067700--Sobic002G098900 Sobic001G067700--Sobic001G178100 Sobic008G018700 Sobic008G018700 Sobic001G067700--Sobic008G018700 Sobic001G067700--Sobic003G010800 Sobic002G181600 Sobic002G181600 Sobic001G067700--Sobic002G181600 Sobic001G067700--Sobic002G310900 Sobic005G111700 Sobic005G111700 Sobic001G067700--Sobic005G111700 Sobic002G069000--Sobic003G433400 Sobic008G116700 Sobic008G116700 Sobic002G069000--Sobic008G116700 Sobic002G069000--Sobic003G403300 Sobic002G069000--Sobic006G270000 Sobic010G027100 Sobic010G027100 Sobic002G069000--Sobic010G027100 Sobic002G069000--Sobic003G198900 Sobic002G069000--Sobic003G010800 Sobic005G048500 Sobic005G048500 Sobic002G069000--Sobic005G048500 Sobic003G065201 Sobic003G065201 Sobic002G069000--Sobic003G065201 Sobic003G250400 Sobic003G250400 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic003G198900--Sobic006G270000 Sobic001G257800 Sobic001G257800 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic003G198900--Sobic008G069300 Sobic004G213300 Sobic004G213300 Sobic003G198900--Sobic004G213300
Octagon: transcription factors


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