Gene annotation
Transcriptome id Sobic.003G318300.9,Sobic.003G318300.3,Sobic.003G318300.10,Sobic.003G318300.2,Sobic.003G318300.6,Sobic.003G318300.7,Sobic.003G318300.8,Sobic.003G318300.1,Sobic.003G318300.4,Sobic.003G318300.11,Sobic.003G318300.5
Synonym Sb03g036550
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1W0VZW2 , C5XLR2
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF825 PTHR24015:SF825 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os01g57410.2,LOC_Os01g57410.1,LOC_Os01g57410.3 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039882
Brachypodium PNT72991 , PNT72990
Barley HORVU3Hr1G077040.11 , HORVU3Hr1G077040.10 , HORVU3Hr1G077040.3 , HORVU3Hr1G077040.2 , HORVU3Hr1G077040.1 , HORVU3Hr1G077040.7 , HORVU3Hr1G077040.6 , HORVU3Hr1G077040.5 , HORVU3Hr1G077040.4 , HORVU3Hr1G077040.9 , HORVU3Hr1G077040.8
Wheat TraesCS3D02G315600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G220900 expressed protein -
2 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
3 Sobic.003G398800 expressed protein -
4 Sobic.010G214100 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
5 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
6 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -
7 Sobic.010G035400 expressed protein -
8 Sobic.007G225500 expressed protein -
9 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
10 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
12 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
13 Sobic.003G306200 hemimethylated DNA binding domain containing protein, expressed -
14 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
15 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
16 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
17 Sobic.008G091400 nucleoside diphosphate kinase, putative, expressed -
18 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
19 Sobic.010G039500 genetic modifier, putative, expressed -
20 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G318300 Sobic003G318300 Sobic002G220900 Sobic002G220900 Sobic003G318300--Sobic002G220900 Sobic007G009200 Sobic007G009200 Sobic003G318300--Sobic007G009200 Sobic003G398800 Sobic003G398800 Sobic003G318300--Sobic003G398800 Sobic010G214100 Sobic010G214100 Sobic003G318300--Sobic010G214100 Sobic003G024300 Sobic003G024300 Sobic003G318300--Sobic003G024300 Sobic006G077400 Sobic006G077400 Sobic003G318300--Sobic006G077400 Sobic010G035400 Sobic010G035400 Sobic003G318300--Sobic010G035400 Sobic007G225500 Sobic007G225500 Sobic003G318300--Sobic007G225500 Sobic002G324500 Sobic002G324500 Sobic003G318300--Sobic002G324500 Sobic002G220900--Sobic003G398800 Sobic008G033000 Sobic008G033000 Sobic002G220900--Sobic008G033000 Sobic007G103400 Sobic007G103400 Sobic002G220900--Sobic007G103400 Sobic001G504400 Sobic001G504400 Sobic002G220900--Sobic001G504400 Sobic002G220900--Sobic007G009200 Sobic009G237100 Sobic009G237100 Sobic002G220900--Sobic009G237100 Sobic003G185900 Sobic003G185900 Sobic002G220900--Sobic003G185900 Sobic005G204200 Sobic005G204200 Sobic002G220900--Sobic005G204200 Sobic002G220900--Sobic010G035400 Sobic007G009200--Sobic009G237100 Sobic007G009200--Sobic003G024300 Sobic006G207800 Sobic006G207800 Sobic007G009200--Sobic006G207800 Sobic007G009200--Sobic003G398800 Sobic006G238200 Sobic006G238200 Sobic007G009200--Sobic006G238200 Sobic001G102800 Sobic001G102800 Sobic007G009200--Sobic001G102800 Sobic007G009200--Sobic006G077400 Sobic010G201700 Sobic010G201700 Sobic007G009200--Sobic010G201700 Sobic007G009200--Sobic010G035400 Sobic003G398800--Sobic006G238200 Sobic003G306200 Sobic003G306200 Sobic003G398800--Sobic003G306200 Sobic009G056700 Sobic009G056700 Sobic003G398800--Sobic009G056700 Sobic003G398800--Sobic007G009200 Sobic003G398800--Sobic007G103400 Sobic009G129300 Sobic009G129300 Sobic003G398800--Sobic009G129300 Sobic003G398800--Sobic002G220900 Sobic003G431700 Sobic003G431700 Sobic003G398800--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic003G398800--Sobic001G491000 Sobic006G101500 Sobic006G101500 Sobic010G214100--Sobic006G101500 Sobic003G160800 Sobic003G160800 Sobic010G214100--Sobic003G160800 Sobic003G387100 Sobic003G387100 Sobic010G214100--Sobic003G387100 Sobic005G063000 Sobic005G063000 Sobic010G214100--Sobic005G063000 Sobic009G125400 Sobic009G125400 Sobic010G214100--Sobic009G125400 Sobic007G085800 Sobic007G085800 Sobic010G214100--Sobic007G085800 Sobic004G211600 Sobic004G211600 Sobic010G214100--Sobic004G211600 Sobic008G116300 Sobic008G116300 Sobic010G214100--Sobic008G116300 Sobic007G052400 Sobic007G052400 Sobic010G214100--Sobic007G052400 Sobic003G024300--Sobic007G009200 Sobic003G024300--Sobic006G077400 Sobic001G329400 Sobic001G329400 Sobic003G024300--Sobic001G329400 Sobic003G024300--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic003G024300--Sobic009G104800 Sobic003G024300--Sobic003G398800 Sobic004G125700 Sobic004G125700 Sobic003G024300--Sobic004G125700 Sobic007G161500 Sobic007G161500 Sobic003G024300--Sobic007G161500 Sobic003G024300--Sobic010G201700 Sobic006G077400--Sobic003G024300 Sobic006G077400--Sobic007G225500 Sobic006G077400--Sobic007G009200 Sobic005G200200 Sobic005G200200 Sobic006G077400--Sobic005G200200 Sobic007G140800 Sobic007G140800 Sobic006G077400--Sobic007G140800 Sobic006G077400--Sobic001G491000 Sobic006G077400--Sobic010G201700 Sobic006G077400--Sobic010G035400 Sobic006G077400--Sobic006G238200 Sobic010G035400--Sobic007G103400 Sobic010G035400--Sobic007G225500 Sobic004G336200 Sobic004G336200 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic009G237000 Sobic009G237000 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic003G002300 Sobic003G002300 Sobic007G225500--Sobic003G002300 Sobic007G225500--Sobic010G035400 Sobic008G102000 Sobic008G102000 Sobic007G225500--Sobic008G102000 Sobic007G225500--Sobic007G052400 Sobic008G171300 Sobic008G171300 Sobic007G225500--Sobic008G171300 Sobic009G043000 Sobic009G043000 Sobic007G225500--Sobic009G043000 Sobic007G225500--Sobic002G275300 Sobic007G225500--Sobic006G077400 Sobic007G225500--Sobic010G201700 Sobic003G367500 Sobic003G367500 Sobic002G324500--Sobic003G367500 Sobic003G234200 Sobic003G234200 Sobic002G324500--Sobic003G234200 Sobic008G117000 Sobic008G117000 Sobic002G324500--Sobic008G117000 Sobic003G431900 Sobic003G431900 Sobic002G324500--Sobic003G431900 Sobic004G215800 Sobic004G215800 Sobic002G324500--Sobic004G215800 Sobic003G256700 Sobic003G256700 Sobic002G324500--Sobic003G256700 Sobic002G324500--Sobic007G009200 Sobic002G324500--Sobic003G024300 Sobic005G089600 Sobic005G089600 Sobic002G324500--Sobic005G089600
Octagon: transcription factors


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