Gene annotation
Transcriptome id Sobic.008G178800.2,Sobic.008G178800.1
Synonym ATCIMS, Sb08g022210, ATMS1, ATMETS
Functional annotation 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
UniProt A0A1B6PEC9
Pfam PF08267 PF01717
Panther DB PTHR30519 PTHR30519:SF0
NCBI CDD -
KEGG Orthology K00549; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Gene Ontology GO:0008652; cellular amino acid biosynthetic process GO:0008270zinc ion binding GO:00038715-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity GO:0009086methionine biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G17920 : Cobalamin-independent synthase family protein
RAP-DB (Rice) LOC_Os12g42884.1,LOC_Os12g42884.3 : 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a007558 , Zm00025a004764 , Zm00025a017208
Brachypodium KQJ85715 , KQJ85714 , KQJ93961 , KQK13905 , KQK13906 , KQK13907
Barley HORVU5Hr1G006780.10 , HORVU4Hr1G002270.3 , HORVU4Hr1G002270.2 , HORVU4Hr1G002270.1 , HORVU4Hr1G002270.7 , HORVU4Hr1G002270.6 , HORVU4Hr1G002270.5 , HORVU4Hr1G002270.4 , HORVU5Hr1G006780.6 , HORVU5Hr1G006780.7 , HORVU5Hr1G006780.4 , HORVU5Hr1G006780.5 , HORVU5Hr1G006780.2 , HORVU5Hr1G006780.3 , HORVU5Hr1G006780.1 , HORVU5Hr1G006780.8 , HORVU5Hr1G006780.9
Wheat TraesCS4B02G014700 , TraesCS4B02G014700 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS4D02G012900 , TraesCS4D02G012900 , TraesCS4A02G298700 , TraesCS5D02G031300 , TraesCS5D02G031300 , TraesCS5A02G024900 , TraesCS5A02G024900 , TraesCS5A02G024900
Populus PNS23354 , PNT21519 , PNS90299 , PNS90298 , PNT21520 , PNT21521 , PNT21522 , PNT21523 , PNS90301 , PNS90300 , PNS90303 , PNS90302 , PNS90305 , PNS90304 , PNS90307 , PNS90306 , PNS90309 , PNS90308


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cDNA sequences
Sobic.008G178800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G038200 receptor protein kinase, putative, expressed -
2 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.010G258500 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed -
4 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
5 Sobic.009G125900 expressed protein -
6 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
7 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
8 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
9 Sobic.010G067500 OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
10 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
14 Sobic.005G096101 - -
15 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
16 Sobic.001G334900 X8 domain containing protein, expressed -
17 Sobic.003G049900 - -
18 Sobic.010G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
19 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
20 Sobic.001G035600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@induced by either light or pathogen inoculation in the BTx623 seedlings(PubMedID : 20529887)@"The bmr30 mutant harbors a mutation in a phenylpropanoid biosynthetic gene that is key to the interconnection between flavonoids and monolignols, both of which are utilized for lignin synthesis in the grasses."(PubMedID : 34925394)@expressed protein K01859: chalcone isomerase


Gene co-expression network
sample Sobic008G178800 Sobic008G178800 Sobic006G038200 Sobic006G038200 Sobic008G178800--Sobic006G038200 Sobic009G063400 Sobic009G063400 Sobic008G178800--Sobic009G063400 Sobic010G258500 Sobic010G258500 Sobic008G178800--Sobic010G258500 Sobic002G347300 Sobic002G347300 Sobic008G178800--Sobic002G347300 Sobic009G125900 Sobic009G125900 Sobic008G178800--Sobic009G125900 Sobic004G282700 Sobic004G282700 Sobic008G178800--Sobic004G282700 Sobic009G232200 Sobic009G232200 Sobic008G178800--Sobic009G232200 Sobic009G017500 Sobic009G017500 Sobic008G178800--Sobic009G017500 Sobic010G067500 Sobic010G067500 Sobic008G178800--Sobic010G067500 Sobic003G170300 Sobic003G170300 Sobic006G038200--Sobic003G170300 Sobic006G038200--Sobic004G282700 Sobic002G338400 Sobic002G338400 Sobic006G038200--Sobic002G338400 Sobic010G264300 Sobic010G264300 Sobic006G038200--Sobic010G264300 Sobic006G038200--Sobic008G178800 Sobic006G038200--Sobic009G017500 Sobic003G216500 Sobic003G216500 Sobic006G038200--Sobic003G216500 Sobic001G035600 Sobic001G035600 Sobic006G038200--Sobic001G035600 Sobic006G075000 Sobic006G075000 Sobic006G038200--Sobic006G075000 Sobic009G063400--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic009G063400--Sobic002G075500 Sobic009G026101 Sobic009G026101 Sobic009G063400--Sobic009G026101 Sobic002G118700 Sobic002G118700 Sobic009G063400--Sobic002G118700 Sobic010G096100 Sobic010G096100 Sobic009G063400--Sobic010G096100 Sobic001G334900 Sobic001G334900 Sobic009G063400--Sobic001G334900 Sobic010G090500 Sobic010G090500 Sobic009G063400--Sobic010G090500 Sobic001G208600 Sobic001G208600 Sobic009G063400--Sobic001G208600 Sobic009G063400--Sobic006G075000 Sobic010G258500--Sobic008G178800 Sobic010G258500--Sobic006G038200 Sobic010G258500--Sobic003G216500 Sobic004G182500 Sobic004G182500 Sobic010G258500--Sobic004G182500 Sobic010G258500--Sobic009G232200 Sobic007G130800 Sobic007G130800 Sobic010G258500--Sobic007G130800 Sobic010G258500--Sobic002G075500 Sobic006G237200 Sobic006G237200 Sobic010G258500--Sobic006G237200 Sobic001G436100 Sobic001G436100 Sobic010G258500--Sobic001G436100 Sobic001G012400 Sobic001G012400 Sobic002G347300--Sobic001G012400 Sobic001G012600 Sobic001G012600 Sobic002G347300--Sobic001G012600 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic009G221900 Sobic009G221900 Sobic002G347300--Sobic009G221900 Sobic003G099166 Sobic003G099166 Sobic002G347300--Sobic003G099166 Sobic002G053900 Sobic002G053900 Sobic002G347300--Sobic002G053900 Sobic002G347300--Sobic002G338400 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic004G051300 Sobic004G051300 Sobic009G125900--Sobic004G051300 Sobic003G254700 Sobic003G254700 Sobic009G125900--Sobic003G254700 Sobic004G282700--Sobic003G170300 Sobic004G282700--Sobic010G264300 Sobic002G180300 Sobic002G180300 Sobic004G282700--Sobic002G180300 Sobic001G096100 Sobic001G096100 Sobic004G282700--Sobic001G096100 Sobic002G356400 Sobic002G356400 Sobic004G282700--Sobic002G356400 Sobic001G304400 Sobic001G304400 Sobic004G282700--Sobic001G304400 Sobic004G282700--Sobic006G038200 Sobic005G194900 Sobic005G194900 Sobic004G282700--Sobic005G194900 Sobic008G132400 Sobic008G132400 Sobic004G282700--Sobic008G132400 Sobic009G232200--Sobic001G334900 Sobic009G232200--Sobic002G347300 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic009G232200--Sobic006G075000 Sobic004G168700 Sobic004G168700 Sobic009G232200--Sobic004G168700 Sobic002G072200 Sobic002G072200 Sobic009G232200--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G017500--Sobic009G221900 Sobic002G030800 Sobic002G030800 Sobic009G017500--Sobic002G030800 Sobic008G072600 Sobic008G072600 Sobic009G017500--Sobic008G072600 Sobic009G017500--Sobic010G096100 Sobic009G017500--Sobic006G075000 Sobic009G017500--Sobic003G099166 Sobic003G238600 Sobic003G238600 Sobic009G017500--Sobic003G238600 Sobic010G067500--Sobic008G178800 Sobic001G230100 Sobic001G230100 Sobic010G067500--Sobic001G230100 Sobic003G348800 Sobic003G348800 Sobic010G067500--Sobic003G348800 Sobic010G067500--Sobic009G017500 Sobic006G002700 Sobic006G002700 Sobic010G067500--Sobic006G002700 Sobic010G067500--Sobic003G254700 Sobic007G047300 Sobic007G047300 Sobic010G067500--Sobic007G047300 Sobic010G067500--Sobic009G125900 Sobic004G111100 Sobic004G111100 Sobic010G067500--Sobic004G111100
Octagon: transcription factors


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