Gene annotation
| Transcriptome id | Sobic.001G035600.1 |
|---|---|
| Synonym | A11, Sb01g003330, TT5, Bmr30, SbCHI;Brown midrib 30,Chalcone isomerase , CFI |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) induced by either light or pathogen inoculation in the BTx623 seedlings (PubMedID : 20529887) "The bmr30 mutant harbors a mutation in a phenylpropanoid biosynthetic gene that is key to the interconnection between flavonoids and monolignols, both of which are utilized for lignin synthesis in the grasses." (PubMedID : 34925394) expressed protein |
| UniProt | C5WV22 |
| Pfam | PF02431 |
| Panther DB | PTHR28039 PTHR28039:SF8 |
| NCBI CDD | - |
| KEGG Orthology | K01859; chalcone isomerase |
| Gene Ontology | GO:0016872; intramolecular lyase activity |
Orthologs (automatic annotation)
| TAIR | AT3G55120 : Chalcone-flavanone isomerase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g60509.2 : expressed protein |
| MaizeGDB (Corn) | Zm00025a016440 , Zm00025a008792 , Zm00025a046859 |
| Brachypodium | KQK12452 |
| Barley | HORVU5Hr1G112670.4 , HORVU5Hr1G112670.5 , HORVU5Hr1G112670.1 , HORVU5Hr1G112670.2 , HORVU5Hr1G112670.3 |
| Wheat | TraesCS5D02G489000 , TraesCS5B02G488900 , TraesCS5A02G475600 |
| Populus | - |
JBrowse
| Sobic.001G035600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G012400 | "UDP-glucose glucosyltransferase, up-regulated under drought stress "(PubMedID : 24655390)@p-hydroxymandelonitrile-O-glucosyltransferase(PubMedID : 10585420)@-(PubMedID : 27964718)@UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase. in vitro substrate regiospecificity(PubMedID : 12946413)@"Cyanohydrin beta-glucosyltransferase, similar to UDP-glucose glucosyltransferase, dhurrin biosynthesis"(PubMedID : 10585420)@cytokinin-O-glucosyltransferase 2, putative, expressed | K13030: cyanohydrin beta-glucosyltransferase |
| 2 | Sobic.002G338400 | uncharacterized secreted protein, putative, expressed | - |
| 3 | Sobic.004G282700 | synthase, putative, expressed | K12451: 3,5-epimerase/4-reductase |
| 4 | Sobic.006G038200 | receptor protein kinase, putative, expressed | - |
| 5 | Sobic.001G012500 | similar to Glutathione S transferase 1(PubMedID : 24655390)@"Glutathione S transferase 1, up-regulated under all the stress condition"(PubMedID : 24655390)@similar to Glutathione S transferase 1(PubMedID : 24655390)@Glutathione S transferase 1(PubMedID : 24655390)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 6 | Sobic.002G347300 | copper methylamine oxidase precursor, putative, expressed | K00276: AOC3, AOC2, primary-amine oxidase |
| 7 | Sobic.009G240700 | -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 8 | Sobic.003G170300 | LYR motif containing protein, putative, expressed | K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 |
| 9 | Sobic.003G216500 | vacuolar ATP synthase, putative, expressed | K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit |
| 10 | Sobic.010G264300 | LYR motif containing protein, putative, expressed | K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9 |
| 11 | Sobic.008G178800 | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed | K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| 12 | Sobic.005G096101 | - | - |
| 13 | Sobic.002G308300 | expressed protein | - |
| 14 | Sobic.009G232200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed | - |
| 15 | Sobic.008G051800 | expressed protein | K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit |
| 16 | Sobic.001G473400 | NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed | K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 |
| 17 | Sobic.006G075000 | Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed | - |
| 18 | Sobic.002G410700 | vacuolar ATP synthase subunit F, putative, expressed | K02151: ATPeV1F, V-type H+-transporting ATPase subunit F |
| 19 | Sobic.001G286200 | expressed protein | K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10 |
| 20 | Sobic.002G078300 | acyl carrier protein, putative, expressed | K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein |
Gene co-expression network
Octagon: transcription factors
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