Gene annotation
Transcriptome id Sobic.008G051800.1
Synonym Sb08g004380, ATVHA-C2, AVA-2PE, AVA-P2
Functional annotation expressed protein
UniProt -
Pfam PF00137
Panther DB PTHR10263 PTHR10263:SF19
NCBI CDD KOG0232; Vacuolar H+-ATPase V0 sector, subunits c/c'
KEGG Orthology K02155; ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT1G19910 : ATPase, F0/V0 complex, subunit C protein
RAP-DB (Rice) LOC_Os12g07140.1 : expressed protein
MaizeGDB (Corn) Zm00025a033973 , Zm00025a040967 , Zm00025a012873 , Zm00025a054030 , Zm00025a025760
Brachypodium KQK08111 , KQJ89223 , KQJ92077
Barley HORVU5Hr1G036250.4 , HORVU5Hr1G036250.2 , HORVU4Hr1G019840.1 , HORVU4Hr1G019840.3 , HORVU1Hr1G002500.4 , HORVU1Hr1G002500.1 , HORVU1Hr1G002500.2 , HORVU1Hr1G002500.3
Wheat TraesCS4B02G110500 , TraesCS4A02G206900 , TraesCS1B02G022800 , TraesCS5D02G130000 , TraesCS1A02G019000 , TraesCS5B02G117600 , TraesCS4D02G108200 , TraesCS5A02G118600
Populus -


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cDNA sequences
Sobic.008G051800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
2 Sobic.007G211500 expressed protein -
3 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
4 Sobic.002G296200 expressed protein -
5 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
6 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
7 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
8 Sobic.004G060500 fiber protein Fb15, putative, expressed -
9 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
10 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
11 Sobic.002G308300 expressed protein -
12 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
13 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
14 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
15 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
16 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
17 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
18 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
19 Sobic.009G215300 fiber protein Fb11, putative, expressed -
20 Sobic.007G134900 expressed protein -


Gene co-expression network
sample Sobic008G051800 Sobic008G051800 Sobic001G286200 Sobic001G286200 Sobic008G051800--Sobic001G286200 Sobic007G211500 Sobic007G211500 Sobic008G051800--Sobic007G211500 Sobic004G260200 Sobic004G260200 Sobic008G051800--Sobic004G260200 Sobic002G296200 Sobic002G296200 Sobic008G051800--Sobic002G296200 Sobic002G309700 Sobic002G309700 Sobic008G051800--Sobic002G309700 Sobic001G282500 Sobic001G282500 Sobic008G051800--Sobic001G282500 Sobic002G356400 Sobic002G356400 Sobic008G051800--Sobic002G356400 Sobic004G060500 Sobic004G060500 Sobic008G051800--Sobic004G060500 Sobic010G264300 Sobic010G264300 Sobic008G051800--Sobic010G264300 Sobic002G078300 Sobic002G078300 Sobic001G286200--Sobic002G078300 Sobic001G286200--Sobic010G264300 Sobic001G304400 Sobic001G304400 Sobic001G286200--Sobic001G304400 Sobic001G286200--Sobic007G211500 Sobic001G286200--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic001G286200--Sobic007G134900 Sobic009G212200 Sobic009G212200 Sobic001G286200--Sobic009G212200 Sobic002G308300 Sobic002G308300 Sobic001G286200--Sobic002G308300 Sobic002G263100 Sobic002G263100 Sobic001G286200--Sobic002G263100 Sobic007G211500--Sobic001G286200 Sobic007G211500--Sobic002G078300 Sobic002G246200 Sobic002G246200 Sobic007G211500--Sobic002G246200 Sobic007G211500--Sobic002G263100 Sobic007G211500--Sobic008G051800 Sobic004G183200 Sobic004G183200 Sobic007G211500--Sobic004G183200 Sobic001G519000 Sobic001G519000 Sobic007G211500--Sobic001G519000 Sobic007G211500--Sobic010G264300 Sobic007G211500--Sobic002G308300 Sobic004G260200--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic002G395000 Sobic002G395000 Sobic004G260200--Sobic002G395000 Sobic004G260200--Sobic002G356400 Sobic001G404800 Sobic001G404800 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic002G296200--Sobic007G134900 Sobic002G296200--Sobic001G074700 Sobic003G215700 Sobic003G215700 Sobic002G296200--Sobic003G215700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic002G296200--Sobic001G047800 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic002G309700--Sobic003G215700 Sobic001G282500--Sobic002G309700 Sobic001G282500--Sobic009G215300 Sobic001G282500--Sobic004G260200 Sobic001G282500--Sobic002G356400 Sobic001G282500--Sobic002G395000 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic003G135600 Sobic003G135600 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic002G356400--Sobic002G309700 Sobic002G356400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic002G356400--Sobic009G119900 Sobic002G356400--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic002G356400--Sobic004G170400 Sobic002G356400--Sobic004G260200 Sobic002G356400--Sobic001G404800 Sobic004G259200 Sobic004G259200 Sobic002G356400--Sobic004G259200 Sobic003G209000 Sobic003G209000 Sobic002G356400--Sobic003G209000 Sobic004G060500--Sobic003G215700 Sobic009G176000 Sobic009G176000 Sobic004G060500--Sobic009G176000 Sobic004G060500--Sobic001G519000 Sobic004G060500--Sobic001G047800 Sobic006G083500 Sobic006G083500 Sobic004G060500--Sobic006G083500 Sobic002G418400 Sobic002G418400 Sobic004G060500--Sobic002G418400 Sobic004G060500--Sobic002G309700 Sobic004G060500--Sobic002G296200 Sobic010G059300 Sobic010G059300 Sobic004G060500--Sobic010G059300 Sobic010G264300--Sobic001G286200 Sobic010G264300--Sobic002G078300 Sobic010G264300--Sobic002G308300 Sobic010G264300--Sobic001G519000 Sobic010G264300--Sobic002G356400 Sobic010G264300--Sobic009G212200 Sobic001G370700 Sobic001G370700 Sobic010G264300--Sobic001G370700 Sobic010G264300--Sobic001G304400 Sobic002G180300 Sobic002G180300 Sobic010G264300--Sobic002G180300
Octagon: transcription factors


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