Gene annotation
| Transcriptome id | Sobic.006G156600.2 |
|---|---|
| Synonym | Sb06g023360 |
| Functional annotation | transporter family protein, putative, expressed |
| UniProt | A0A1Z5RE43 |
| Pfam | PF00083 |
| Panther DB | PTHR23500:SF53 PTHR23500 |
| NCBI CDD | KOG0254; Predicted transporter (major facilitator superfamily) |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT2G20780 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g44750.1 : transporter family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a010465 |
| Brachypodium | KQJ83722 , PNT61532 |
| Barley | - |
| Wheat | TraesCS2D02G369400 , TraesCS2D02G369400 , TraesCS2A02G373200 , TraesCS2A02G373200 , TraesCS2D02G369400 , TraesCS2B02G390300 , TraesCS2B02G390300 |
| Populus | - |
JBrowse
| Sobic.006G156600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G257800 | chloride transporter, chloride channel family, putative, expressed | - |
| 2 | Sobic.007G009500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed | - |
| 3 | Sobic.002G075500 | CESA8 - cellulose synthase, expressed | K10999: cellulose synthase A |
| 4 | Sobic.004G007600 | glycosyltransferase protein, putative, expressed | - |
| 5 | Sobic.001G108350 | - | - |
| 6 | Sobic.001G132800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.21 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 7 | Sobic.009G125900 | expressed protein | - |
| 8 | Sobic.003G254700 | glycosyltransferase family 43 protein, putative, expressed | - |
| 9 | Sobic.007G054500 | ABC-2 type transporter domain containing protein, expressed | - |
| 10 | Sobic.005G110490 | - | - |
| 11 | Sobic.002G372800 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 12 | Sobic.009G063400 | "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed | K10999: cellulose synthase A |
| 13 | Sobic.001G133900 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 14 | Sobic.002G167000 | "C3 PTPC, housekeeping gene"(PubMedID : 2308851)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 15 | Sobic.001G230100 | 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed | K07513: acetyl-CoA acyltransferase 1 |
| 16 | Sobic.005G092000 | resistance protein, putative, expressed | - |
| 17 | Sobic.004G111100 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 18 | Sobic.009G236100 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 19 | Sobic.007G047300 | encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed | K05279: flavonol 3-O-methyltransferase |
| 20 | Sobic.009G026101 | - | - |
Gene co-expression network
Octagon: transcription factors
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