Gene annotation
Transcriptome id Sobic.009G236100.1
Synonym Sb09g028860, KCS4
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt C5YVX8
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF15
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G19440 : 3-ketoacyl-CoA synthase 4
RAP-DB (Rice) LOC_Os05g49290.2 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a000930 , Zm00025a032652 , Zm00025a020257 , Zm00025a001551 , Zm00025a042702 , Zm00025a029505 , Zm00025a044614 , Zm00025a053041 , Zm00025a044659 , Zm00025a036645 , Zm00025a052892 , Zm00025a001341 , Zm00025a021922
Brachypodium KQK04806 , KQJ93957 , KQJ88016 , KQK18680 , PNT76138 , PNT66146 , KQK22844 , KQK23304
Barley HORVU6Hr1G073300.1 , HORVU4Hr1G076940.2 , HORVU6Hr1G004830.1 , HORVU4Hr1G067340.4 , HORVU6Hr1G036950.11 , HORVU6Hr1G036950.10 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU1Hr1G086760.1 , HORVU6Hr1G036950.7 , HORVU6Hr1G036950.5 , HORVU6Hr1G036950.4 , HORVU6Hr1G036950.8 , HORVU7Hr1G042070.2 , HORVU7Hr1G042070.3 , HORVU7Hr1G042070.1 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU4Hr1G067340.2 , HORVU4Hr1G067340.3 , HORVU4Hr1G067340.1 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1 , HORVU4Hr1G076940.3 , HORVU6Hr1G036950.6 , HORVU6Hr1G036950.9
Wheat TraesCS4A02G065300 , TraesCS4D02G242200 , TraesCS4B02G297500 , TraesCS6A02G177700 , TraesCS4A02G007400
Populus -


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cDNA sequences
Sobic.009G236100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
2 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
4 Sobic.010G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
5 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
6 Sobic.009G215000 - -
7 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
8 Sobic.003G368000 OsFBT3 - F-box and tubby domain containing protein, expressed -
9 Sobic.001G006201 - -
10 Sobic.005G194900 phosphoserine phosphatase, chloroplast precursor, putative, expressed K01079: serB, phosphoserine phosphatase
11 Sobic.006G100501 - -
12 Sobic.010G115600 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
13 Sobic.006G282300 - -
14 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
15 Sobic.008G147900 phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
16 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
17 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
18 Sobic.010G097200 expressed protein -
19 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.002G383900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase


Gene co-expression network
sample Sobic009G236100 Sobic009G236100 Sobic007G047300 Sobic007G047300 Sobic009G236100--Sobic007G047300 Sobic004G111100 Sobic004G111100 Sobic009G236100--Sobic004G111100 Sobic001G360700 Sobic001G360700 Sobic009G236100--Sobic001G360700 Sobic010G101900 Sobic010G101900 Sobic009G236100--Sobic010G101900 Sobic003G257400 Sobic003G257400 Sobic009G236100--Sobic003G257400 Sobic009G215000 Sobic009G215000 Sobic009G236100--Sobic009G215000 Sobic003G227700 Sobic003G227700 Sobic009G236100--Sobic003G227700 Sobic003G368000 Sobic003G368000 Sobic009G236100--Sobic003G368000 Sobic001G006201 Sobic001G006201 Sobic009G236100--Sobic001G006201 Sobic007G047300--Sobic001G360700 Sobic004G047600 Sobic004G047600 Sobic007G047300--Sobic004G047600 Sobic009G162300 Sobic009G162300 Sobic007G047300--Sobic009G162300 Sobic003G352700 Sobic003G352700 Sobic007G047300--Sobic003G352700 Sobic001G471800 Sobic001G471800 Sobic007G047300--Sobic001G471800 Sobic007G047300--Sobic004G111100 Sobic002G146000 Sobic002G146000 Sobic007G047300--Sobic002G146000 Sobic002G207200 Sobic002G207200 Sobic007G047300--Sobic002G207200 Sobic002G203900 Sobic002G203900 Sobic007G047300--Sobic002G203900 Sobic004G111100--Sobic010G101900 Sobic004G111100--Sobic007G047300 Sobic003G254700 Sobic003G254700 Sobic004G111100--Sobic003G254700 Sobic004G111100--Sobic009G162300 Sobic004G111100--Sobic003G227700 Sobic004G111100--Sobic001G360700 Sobic004G111100--Sobic002G207200 Sobic001G072600 Sobic001G072600 Sobic004G111100--Sobic001G072600 Sobic009G034300 Sobic009G034300 Sobic004G111100--Sobic009G034300 Sobic001G360700--Sobic004G047600 Sobic001G360700--Sobic007G047300 Sobic002G167600 Sobic002G167600 Sobic001G360700--Sobic002G167600 Sobic001G360700--Sobic002G203900 Sobic001G360700--Sobic001G471800 Sobic002G254900 Sobic002G254900 Sobic001G360700--Sobic002G254900 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G360700--Sobic001G072600 Sobic010G101900--Sobic004G111100 Sobic010G101900--Sobic007G047300 Sobic006G282300 Sobic006G282300 Sobic010G101900--Sobic006G282300 Sobic003G151600 Sobic003G151600 Sobic010G101900--Sobic003G151600 Sobic002G252000 Sobic002G252000 Sobic010G101900--Sobic002G252000 Sobic004G071000 Sobic004G071000 Sobic010G101900--Sobic004G071000 Sobic010G069900 Sobic010G069900 Sobic010G101900--Sobic010G069900 Sobic010G101900--Sobic003G227700 Sobic010G101900--Sobic009G215000 Sobic003G000100 Sobic003G000100 Sobic003G257400--Sobic003G000100 Sobic007G086300 Sobic007G086300 Sobic003G257400--Sobic007G086300 Sobic004G106100 Sobic004G106100 Sobic003G257400--Sobic004G106100 Sobic006G106900 Sobic006G106900 Sobic003G257400--Sobic006G106900 Sobic001G414800 Sobic001G414800 Sobic003G257400--Sobic001G414800 Sobic003G353200 Sobic003G353200 Sobic003G257400--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic003G257400--Sobic003G280000 Sobic006G003100 Sobic006G003100 Sobic003G257400--Sobic006G003100 Sobic004G306900 Sobic004G306900 Sobic003G257400--Sobic004G306900 Sobic002G053900 Sobic002G053900 Sobic009G215000--Sobic002G053900 Sobic001G046800 Sobic001G046800 Sobic009G215000--Sobic001G046800 Sobic009G008800 Sobic009G008800 Sobic009G215000--Sobic009G008800 Sobic010G106700 Sobic010G106700 Sobic009G215000--Sobic010G106700 Sobic001G484000 Sobic001G484000 Sobic009G215000--Sobic001G484000 Sobic009G072800 Sobic009G072800 Sobic009G215000--Sobic009G072800 Sobic005G052500 Sobic005G052500 Sobic009G215000--Sobic005G052500 Sobic001G208600 Sobic001G208600 Sobic009G215000--Sobic001G208600 Sobic003G206700 Sobic003G206700 Sobic009G215000--Sobic003G206700 Sobic003G227700--Sobic010G069900 Sobic003G227700--Sobic003G257400 Sobic010G071400 Sobic010G071400 Sobic003G227700--Sobic010G071400 Sobic003G227700--Sobic006G003100 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic003G227700--Sobic004G106100 Sobic004G161900 Sobic004G161900 Sobic003G368000--Sobic004G161900 Sobic008G037900 Sobic008G037900 Sobic003G368000--Sobic008G037900 Sobic003G099000 Sobic003G099000 Sobic003G368000--Sobic003G099000 Sobic010G045400 Sobic010G045400 Sobic003G368000--Sobic010G045400 Sobic003G017601 Sobic003G017601 Sobic003G368000--Sobic003G017601 Sobic010G097200 Sobic010G097200 Sobic003G368000--Sobic010G097200 Sobic010G191700 Sobic010G191700 Sobic003G368000--Sobic010G191700 Sobic003G079100 Sobic003G079100 Sobic003G368000--Sobic003G079100 Sobic002G391400 Sobic002G391400 Sobic003G368000--Sobic002G391400 Sobic001G006201--Sobic003G227700 Sobic001G006201--Sobic003G257400 Sobic003G064800 Sobic003G064800 Sobic001G006201--Sobic003G064800 Sobic001G006201--Sobic004G306900 Sobic010G192366 Sobic010G192366 Sobic001G006201--Sobic010G192366 Sobic001G238000 Sobic001G238000 Sobic001G006201--Sobic001G238000 Sobic001G006201--Sobic010G071400 Sobic001G006201--Sobic010G097200 Sobic001G421000 Sobic001G421000 Sobic001G006201--Sobic001G421000
Octagon: transcription factors


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