Gene annotation
| Transcriptome id | Sobic.005G194900.1 |
|---|---|
| Synonym | PSP, Sb05g025180 |
| Functional annotation | phosphoserine phosphatase, chloroplast precursor, putative, expressed |
| UniProt | Q9XEQ8 , C5Y6W1 |
| Pfam | PF00702 |
| Panther DB | PTHR10000 PTHR10000:SF13 |
| NCBI CDD | KOG1615; Phosphoserine phosphatase |
| KEGG Orthology | K01079; serB, phosphoserine phosphatase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G18640 : 3-phosphoserine phosphatase |
|---|---|
| RAP-DB (Rice) | LOC_Os11g41160.3 : phosphoserine phosphatase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029292 |
| Brachypodium | - |
| Barley | HORVU2Hr1G026800.8 , HORVU2Hr1G026800.1 , HORVU2Hr1G026800.2 , HORVU2Hr1G026800.3 , HORVU2Hr1G026800.4 , HORVU2Hr1G026800.5 , HORVU2Hr1G026800.6 , HORVU2Hr1G026800.7 |
| Wheat | TraesCS2A02G149300 , TraesCS2B02G174200 , TraesCS2D02G154100 |
| Populus | - |
JBrowse
| Sobic.005G194900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G282700 | synthase, putative, expressed | K12451: 3,5-epimerase/4-reductase |
| 2 | Sobic.002G431100 | OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed | K00434: L-ascorbate peroxidase |
| 3 | Sobic.009G236100 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 4 | Sobic.007G147800 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed | - |
| 5 | Sobic.003G428300 | Decreased expression in phyB-1 mutant(PubMedID : 26893475)@OsRR4 type-A response regulator, expressed | K14492: two-component response regulator ARR-A family |
| 6 | Sobic.010G187500 | CRAL/TRIO domain containing protein, expressed | - |
| 7 | Sobic.004G213200 | ribosomal protein S17, putative, expressed | K02949: RP-S11e, small subunit ribosomal protein S11e |
| 8 | Sobic.004G162000 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K01802: peptidylprolyl isomerase |
| 9 | Sobic.007G047300 | encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed | K05279: flavonol 3-O-methyltransferase |
| 10 | Sobic.002G415000 | POEI49 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 11 | Sobic.003G206700 | heavy metal-associated domain containing protein, expressed | - |
| 12 | Sobic.002G033400 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 13 | Sobic.001G096100 | DNA-binding protein-related, putative, expressed | K07466: RFA1, RPA1, replication factor A1 |
| 14 | Sobic.004G111100 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 15 | Sobic.009G017500 | beta-hexosaminidase precursor, putative, expressed | K12373: hexosaminidase |
| 16 | Sobic.009G238900 | dehydrogenase, putative, expressed | K00031: IDH1, IDH2, isocitrate dehydrogenase |
| 17 | Sobic.006G035900 | ribosomal protein, putative, expressed | K02995: RP-S8e, small subunit ribosomal protein S8e |
| 18 | Sobic.010G106700 | oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed | - |
| 19 | Sobic.008G132400 | expressed protein | - |
| 20 | Sobic.003G151600 | S-adenosylmethionine synthetase, putative, expressed | K00789: S-adenosylmethionine synthetase |
Gene co-expression network
Octagon: transcription factors
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