Gene annotation
| Transcriptome id | Sobic.003G428300.1 |
|---|---|
| Synonym | Type-A response regulator 9, ARR9, ARR9, ATRR4, Sb03g046040 |
| Functional annotation | Decreased expression in phyB-1 mutant (PubMedID : 26893475) OsRR4 type-A response regulator, expressed |
| UniProt | C5XHX8 |
| Pfam | PF00072 |
| Panther DB | PTHR26402 PTHR26402:SF532 |
| NCBI CDD | - |
| KEGG Orthology | K14492; two-component response regulator ARR-A family |
| Gene Ontology | GO:0000160; phosphorelay signal transduction system |
Orthologs (automatic annotation)
| TAIR | AT3G57040 : response regulator 9 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g72330.1 : OsRR4 type-A response regulator, expressed |
| MaizeGDB (Corn) | Zm00025a039115 , Zm00025a025954 |
| Brachypodium | KQK11584 |
| Barley | - |
| Wheat | TraesCS3B02G548600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G426200 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 2 | Sobic.008G079800 | Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed | K01188: beta-glucosidase |
| 3 | Sobic.004G165300 | Cupin domain containing protein, expressed | - |
| 4 | Sobic.006G117100 | Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed | K01188: beta-glucosidase |
| 5 | Sobic.007G192000 | ACR5, putative, expressed | - |
| 6 | Sobic.003G082700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed | - |
| 7 | Sobic.002G415000 | POEI49 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 8 | Sobic.003G105000 | kinase, pfkB family, putative, expressed | - |
| 9 | Sobic.002G094600 | "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed | K10999: cellulose synthase A |
| 10 | Sobic.005G194900 | phosphoserine phosphatase, chloroplast precursor, putative, expressed | K01079: serB, phosphoserine phosphatase |
| 11 | Sobic.003G128800 | expansin precursor, putative, expressed | - |
| 12 | Sobic.008G157000 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 13 | Sobic.004G121900 | expansin precursor, putative, expressed | - |
| 14 | Sobic.003G352700 | similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 15 | Sobic.003G157700 | expressed protein | - |
| 16 | Sobic.009G008800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed | K16290: xylem cysteine proteinase |
| 17 | Sobic.001G484000 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 18 | Sobic.001G471800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed | - |
| 19 | Sobic.010G187500 | CRAL/TRIO domain containing protein, expressed | - |
| 20 | Sobic.010G106700 | oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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