Gene annotation
Transcriptome id Sobic.008G157000.1
Synonym SHY2, Sb08g020590, auxin/indole-3-acetic acid (Aux/IAA), SbIAA18, IAA3
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5YRE3
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF13
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04240 : AUX/IAA transcriptional regulator family protein
RAP-DB (Rice) LOC_Os12g40900.1 : OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a004598 , Zm00025a025292 , Zm00025a008579 , Zm00025a007349 , Zm00025a016565 , Zm00025a045194 , Zm00025a017284
Brachypodium KQK12696 , KQK14080 , KQK20568 , KQJ85958
Barley HORVU5Hr1G106350.4 , HORVU5Hr1G106350.2 , HORVU5Hr1G106350.3 , HORVU5Hr1G106350.1 , HORVU5Hr1G093640.4 , HORVU5Hr1G093640.1 , HORVU5Hr1G093640.3 , HORVU5Hr1G093640.2 , HORVU5Hr1G014290.2 , HORVU5Hr1G014290.1
Wheat TraesCS3A02G270000 , TraesCS5B02G446100 , TraesCS5D02G449400 , TraesCS5B02G058800 , TraesCS5B02G381800 , TraesCS5D02G388200 , TraesCS5D02G069200 , TraesCS3B02G303900 , TraesCS5A02G058700 , TraesCS5A02G378200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G357800 SHR, putative, expressed -
2 Sobic.003G236600 expressed protein -
3 Sobic.001G250100 thaumatin, putative, expressed -
4 Sobic.004G165300 Cupin domain containing protein, expressed -
5 Sobic.003G003700 ABIL2, putative, expressed -
6 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.001G112800 - -
8 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
9 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
10 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
11 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -
12 Sobic.003G345700 OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
13 Sobic.010G138300 DUF617 domain containing protein, expressed -
14 Sobic.003G428300 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@OsRR4 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
15 Sobic.008G021900 nucleoside-triphosphatase, putative, expressed K14641: apyrase
16 Sobic.003G294100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydropyrimidinase, putative, expressed K01465: URA4, dihydroorotase
17 Sobic.003G128800 expansin precursor, putative, expressed -
18 Sobic.001G314000 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.006G160900 NAC domain containing protein, putative, expressed -
20 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4


Gene co-expression network
sample Sobic008G157000 Sobic008G157000 Sobic002G357800 Sobic002G357800 Sobic008G157000--Sobic002G357800 Sobic003G236600 Sobic003G236600 Sobic008G157000--Sobic003G236600 Sobic001G250100 Sobic001G250100 Sobic008G157000--Sobic001G250100 Sobic004G165300 Sobic004G165300 Sobic008G157000--Sobic004G165300 Sobic003G003700 Sobic003G003700 Sobic008G157000--Sobic003G003700 Sobic003G426200 Sobic003G426200 Sobic008G157000--Sobic003G426200 Sobic001G112800 Sobic001G112800 Sobic008G157000--Sobic001G112800 Sobic010G218300 Sobic010G218300 Sobic008G157000--Sobic010G218300 Sobic002G094600 Sobic002G094600 Sobic008G157000--Sobic002G094600 Sobic007G154200 Sobic007G154200 Sobic002G357800--Sobic007G154200 Sobic006G003100 Sobic006G003100 Sobic002G357800--Sobic006G003100 Sobic003G020200 Sobic003G020200 Sobic002G357800--Sobic003G020200 Sobic002G357800--Sobic003G236600 Sobic001G455100 Sobic001G455100 Sobic002G357800--Sobic001G455100 Sobic006G201000 Sobic006G201000 Sobic002G357800--Sobic006G201000 Sobic001G314000 Sobic001G314000 Sobic002G357800--Sobic001G314000 Sobic009G074500 Sobic009G074500 Sobic002G357800--Sobic009G074500 Sobic002G357800--Sobic008G157000 Sobic008G102800 Sobic008G102800 Sobic003G236600--Sobic008G102800 Sobic006G028500 Sobic006G028500 Sobic003G236600--Sobic006G028500 Sobic003G140700 Sobic003G140700 Sobic003G236600--Sobic003G140700 Sobic009G199001 Sobic009G199001 Sobic003G236600--Sobic009G199001 Sobic004G322100 Sobic004G322100 Sobic003G236600--Sobic004G322100 Sobic001G238000 Sobic001G238000 Sobic003G236600--Sobic001G238000 Sobic003G236600--Sobic002G094600 Sobic004G110700 Sobic004G110700 Sobic003G236600--Sobic004G110700 Sobic004G306900 Sobic004G306900 Sobic003G236600--Sobic004G306900 Sobic001G059600 Sobic001G059600 Sobic001G250100--Sobic001G059600 Sobic006G160900 Sobic006G160900 Sobic001G250100--Sobic006G160900 Sobic001G471800 Sobic001G471800 Sobic001G250100--Sobic001G471800 Sobic009G008800 Sobic009G008800 Sobic001G250100--Sobic009G008800 Sobic002G030800 Sobic002G030800 Sobic001G250100--Sobic002G030800 Sobic010G014400 Sobic010G014400 Sobic001G250100--Sobic010G014400 Sobic003G183300 Sobic003G183300 Sobic001G250100--Sobic003G183300 Sobic001G163800 Sobic001G163800 Sobic001G250100--Sobic001G163800 Sobic004G193500 Sobic004G193500 Sobic001G250100--Sobic004G193500 Sobic004G165300--Sobic002G094600 Sobic004G165300--Sobic001G471800 Sobic001G059500 Sobic001G059500 Sobic004G165300--Sobic001G059500 Sobic002G311501 Sobic002G311501 Sobic004G165300--Sobic002G311501 Sobic003G368100 Sobic003G368100 Sobic004G165300--Sobic003G368100 Sobic001G068500 Sobic001G068500 Sobic004G165300--Sobic001G068500 Sobic002G365801 Sobic002G365801 Sobic004G165300--Sobic002G365801 Sobic004G165300--Sobic009G008800 Sobic004G165300--Sobic004G193500 Sobic001G468500 Sobic001G468500 Sobic003G003700--Sobic001G468500 Sobic003G420100 Sobic003G420100 Sobic003G003700--Sobic003G420100 Sobic008G143000 Sobic008G143000 Sobic003G003700--Sobic008G143000 Sobic009G242501 Sobic009G242501 Sobic003G003700--Sobic009G242501 Sobic003G247600 Sobic003G247600 Sobic003G003700--Sobic003G247600 Sobic001G528600 Sobic001G528600 Sobic003G003700--Sobic001G528600 Sobic008G035900 Sobic008G035900 Sobic003G003700--Sobic008G035900 Sobic003G003700--Sobic008G157000 Sobic004G286700 Sobic004G286700 Sobic003G003700--Sobic004G286700 Sobic006G205700 Sobic006G205700 Sobic003G426200--Sobic006G205700 Sobic002G391400 Sobic002G391400 Sobic003G426200--Sobic002G391400 Sobic008G022100 Sobic008G022100 Sobic003G426200--Sobic008G022100 Sobic003G167300 Sobic003G167300 Sobic003G426200--Sobic003G167300 Sobic007G206800 Sobic007G206800 Sobic003G426200--Sobic007G206800 Sobic002G115600 Sobic002G115600 Sobic003G426200--Sobic002G115600 Sobic010G241900 Sobic010G241900 Sobic003G426200--Sobic010G241900 Sobic007G220400 Sobic007G220400 Sobic003G426200--Sobic007G220400 Sobic009G259800 Sobic009G259800 Sobic003G426200--Sobic009G259800 Sobic001G112800--Sobic008G157000 Sobic008G021900 Sobic008G021900 Sobic001G112800--Sobic008G021900 Sobic010G063900 Sobic010G063900 Sobic001G112800--Sobic010G063900 Sobic001G112800--Sobic001G528600 Sobic001G112800--Sobic010G218300 Sobic002G319200 Sobic002G319200 Sobic001G112800--Sobic002G319200 Sobic005G164700 Sobic005G164700 Sobic001G112800--Sobic005G164700 Sobic001G112800--Sobic003G003700 Sobic002G280700 Sobic002G280700 Sobic001G112800--Sobic002G280700 Sobic001G460400 Sobic001G460400 Sobic010G218300--Sobic001G460400 Sobic002G283900 Sobic002G283900 Sobic010G218300--Sobic002G283900 Sobic004G161900 Sobic004G161900 Sobic010G218300--Sobic004G161900 Sobic010G045400 Sobic010G045400 Sobic010G218300--Sobic010G045400 Sobic010G218300--Sobic006G160900 Sobic009G238900 Sobic009G238900 Sobic010G218300--Sobic009G238900 Sobic008G191400 Sobic008G191400 Sobic010G218300--Sobic008G191400 Sobic009G221500 Sobic009G221500 Sobic010G218300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G218300--Sobic001G245800 Sobic002G094600--Sobic004G165300 Sobic002G094600--Sobic001G471800 Sobic002G094600--Sobic003G236600 Sobic002G094600--Sobic003G183300 Sobic002G094600--Sobic009G008800 Sobic001G484000 Sobic001G484000 Sobic002G094600--Sobic001G484000 Sobic002G094600--Sobic004G193500 Sobic002G146000 Sobic002G146000 Sobic002G094600--Sobic002G146000 Sobic006G282300 Sobic006G282300 Sobic002G094600--Sobic006G282300
Octagon: transcription factors


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