Gene annotation
| Transcriptome id | Sobic.010G106700.1 |
|---|---|
| Synonym | AOP1, Sb10g009340, AOP, AOP1.1 |
| Functional annotation | oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed |
| UniProt | C5Z816 |
| Pfam | PF03171 |
| Panther DB | PTHR10209 PTHR10209:SF211 |
| NCBI CDD | KOG0143; Iron/ascorbate family oxidoreductases |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT4G03070 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g16450.1 : retrotransposon protein, putative, Ty3-gypsy subclass, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G046800 | plastocyanin-like domain containing protein, putative, expressed | - |
| 2 | Sobic.009G008800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed | K16290: xylem cysteine proteinase |
| 3 | Sobic.002G053900 | Cupin domain containing protein, expressed | - |
| 4 | Sobic.010G047600 | plant protein of unknown function domain containing protein, expressed | - |
| 5 | Sobic.001G059500 | LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 6 | Sobic.003G352700 | similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 7 | Sobic.001G261460 | - | - |
| 8 | Sobic.001G068500 | lysine-rich arabinogalactan protein 19 precursor, putative, expressed | - |
| 9 | Sobic.003G082700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed | - |
| 10 | Sobic.009G162300 | similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 11 | Sobic.005G052500 | "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 12 | Sobic.001G484000 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 13 | Sobic.002G244300 | fasciclin domain containing protein, expressed | - |
| 14 | Sobic.002G094600 | "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed | K10999: cellulose synthase A |
| 15 | Sobic.004G083500 | O-methyltransferase, putative, expressed | - |
| 16 | Sobic.003G368100 | transferase family protein, putative, expressed | K15400: omega-hydroxypalmitate O-feruloyl transferase |
| 17 | Sobic.003G239100 | lipase class 3 family protein, putative, expressed | - |
| 18 | Sobic.009G215000 | - | - |
| 19 | Sobic.003G206700 | heavy metal-associated domain containing protein, expressed | - |
| 20 | Sobic.004G165300 | Cupin domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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