Gene annotation
Transcriptome id Sobic.002G033400.1,Sobic.002G033400.2
Synonym Sb02g002900, RFNR2, ATRFNR2
Functional annotation ferredoxin--NADP reductase, chloroplast precursor, putative, expressed
UniProt C5X9I1
Pfam PF00175
Panther DB PTHR19384 PTHR19384:SF78
NCBI CDD -
KEGG Orthology K02641; ferredoxin--NADP+ reductase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G30510 : root FNR 2
RAP-DB (Rice) LOC_Os07g05400.1 : ferredoxin--NADP reductase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045006
Brachypodium KQK12877
Barley HORVU5Hr1G103180.4 , HORVU5Hr1G103180.5 , HORVU5Hr1G103180.7 , HORVU5Hr1G103180.1 , HORVU5Hr1G103180.2 , HORVU5Hr1G103180.3 , HORVU5Hr1G103180.8 , HORVU5Hr1G103180.9 , HORVU2Hr1G038830.9 , HORVU2Hr1G038830.7 , HORVU2Hr1G038830.3 , HORVU5Hr1G103180.11 , HORVU2Hr1G038830.8 , HORVU2Hr1G038830.6 , HORVU2Hr1G038830.4 , HORVU2Hr1G038830.5 , HORVU2Hr1G038830.2 , HORVU2Hr1G038830.1 , HORVU5Hr1G103180.10 , HORVU2Hr1G038830.10 , HORVU2Hr1G038830.11 , HORVU2Hr1G038830.12 , HORVU5Hr1G103180.6
Wheat TraesCS2B02G272500 , TraesCS5A02G423000 , TraesCS2A02G252800 , TraesCS5D02G431300 , TraesCS5B02G424900 , TraesCS2D02G253400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G261400 DUF292 domain containing protein, expressed -
2 Sobic.010G205300 secreted salivary protein, putative, expressed -
3 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
4 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
5 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
6 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.004G272300 expressed protein -
8 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
9 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
10 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
11 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
12 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
13 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
14 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
16 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
17 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
18 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
19 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon


Gene co-expression network
sample Sobic002G033400 Sobic002G033400 Sobic003G261400 Sobic003G261400 Sobic002G033400--Sobic003G261400 Sobic010G205300 Sobic010G205300 Sobic002G033400--Sobic010G205300 Sobic009G198500 Sobic009G198500 Sobic002G033400--Sobic009G198500 Sobic003G124800 Sobic003G124800 Sobic002G033400--Sobic003G124800 Sobic001G096100 Sobic001G096100 Sobic002G033400--Sobic001G096100 Sobic001G005900 Sobic001G005900 Sobic002G033400--Sobic001G005900 Sobic004G272300 Sobic004G272300 Sobic002G033400--Sobic004G272300 Sobic006G252200 Sobic006G252200 Sobic002G033400--Sobic006G252200 Sobic009G217900 Sobic009G217900 Sobic002G033400--Sobic009G217900 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic002G400000 Sobic002G400000 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic001G005900--Sobic002G078400 Sobic001G005900--Sobic001G502200 Sobic001G005900--Sobic004G130900 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic004G272300--Sobic009G198500 Sobic004G272300--Sobic004G300900 Sobic004G272300--Sobic001G005900 Sobic004G272300--Sobic007G168600 Sobic004G272300--Sobic002G078400 Sobic004G272300--Sobic003G124800 Sobic004G351500 Sobic004G351500 Sobic004G272300--Sobic004G351500 Sobic004G272300--Sobic002G400000 Sobic001G314500 Sobic001G314500 Sobic004G272300--Sobic001G314500 Sobic007G176200 Sobic007G176200 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic004G130100 Sobic004G130100 Sobic009G217900--Sobic004G130100 Sobic002G363100 Sobic002G363100 Sobic009G217900--Sobic002G363100 Sobic009G217900--Sobic001G501200 Sobic009G217900--Sobic010G205300 Sobic005G033200 Sobic005G033200 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G217900--Sobic009G198500
Octagon: transcription factors


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