Gene annotation
Transcriptome id Sobic.001G483600.1
Synonym Sb01g045260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt A0A1B6QQ83
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF72
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G05940 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os03g08170.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a017867 , Zm00025a049633 , Zm00025a056803 , Zm00025a018394 , Zm00025a041769 , Zm00025a006844 , Zm00025a018728 , Zm00025a042449 , Zm00025a048740 , Zm00025a000914 , Zm00025a032271 , Zm00025a053364 , Zm00025a035043
Brachypodium KQK07880 , KQJ96794 , KQK15277 , KQK23335 , PNT67415
Barley HORVU4Hr1G064260.1 , HORVU4Hr1G064260.2 , HORVU4Hr1G064260.3 , HORVU4Hr1G064260.4 , HORVU4Hr1G064260.5 , HORVU4Hr1G064260.6 , HORVU4Hr1G064260.7 , HORVU5Hr1G061760.3 , HORVU5Hr1G061760.2 , HORVU5Hr1G061760.1 , HORVU5Hr1G061760.6 , HORVU5Hr1G061760.5 , HORVU5Hr1G061760.4 , HORVU0Hr1G039910.2 , HORVU2Hr1G031710.1 , HORVU2Hr1G031710.2 , HORVU2Hr1G031710.3 , HORVU4Hr1G082100.1 , HORVU4Hr1G082100.2 , HORVU4Hr1G082100.5 , HORVU4Hr1G082100.4 , HORVU7Hr1G088710.3 , HORVU7Hr1G088710.2 , HORVU6Hr1G064690.4 , HORVU6Hr1G064690.15 , HORVU6Hr1G064690.14 , HORVU6Hr1G064690.13 , HORVU6Hr1G064690.12 , HORVU6Hr1G064690.11 , HORVU6Hr1G064690.10 , HORVU6Hr1G064690.7 , HORVU6Hr1G064690.6 , HORVU6Hr1G064690.5 , HORVU6Hr1G064690.3 , HORVU6Hr1G064690.2 , HORVU6Hr1G064690.9 , HORVU6Hr1G064690.8 , HORVU7Hr1G096400.4 , HORVU7Hr1G096400.2 , HORVU7Hr1G096400.3 , HORVU7Hr1G096400.1 , HORVU4Hr1G076520.3 , HORVU4Hr1G076520.5
Wheat TraesCS6A02G336600 , TraesCS6D02G235300 , TraesCS6B02G271700 , TraesCS4D02G293200 , TraesCS4D02G322300 , TraesCS4D02G322300 , TraesCS6A02G253700 , TraesCS4A02G073500 , TraesCS2D02G178100 , TraesCS5B02G208500 , TraesCS5B02G208200 , TraesCS2A02G170600 , TraesCS5A02G210200 , TraesCS4B02G294300 , TraesCS4A02G010000 , TraesCS4B02G229700 , TraesCS5B02G208600 , TraesCS4B02G325400 , TraesCS5A02G215400 , TraesCS4D02G231100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G192366 - -
2 Sobic.010G192432 - K14431: transcription factor TGA
3 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
4 Sobic.010G097200 expressed protein -
5 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
6 Sobic.004G078800 transcription factor, putative, expressed K14431: transcription factor TGA
7 Sobic.001G006201 - -
8 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
9 Sobic.002G203900 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
10 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
11 Sobic.004G177000 glycosyl transferase, putative, expressed -
12 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
13 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
16 Sobic.006G135300 expressed protein -
17 Sobic.004G119800 expansin precursor, putative, expressed -
18 Sobic.010G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
19 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
20 Sobic.003G045900 gibberellin 3-beta-dioxygenase 2-2, putative, expressed K04124: gibberellin 3beta-dioxygenase


Gene co-expression network
sample Sobic001G483600 Sobic001G483600 Sobic010G192366 Sobic010G192366 Sobic001G483600--Sobic010G192366 Sobic010G192432 Sobic010G192432 Sobic001G483600--Sobic010G192432 Sobic003G227700 Sobic003G227700 Sobic001G483600--Sobic003G227700 Sobic010G097200 Sobic010G097200 Sobic001G483600--Sobic010G097200 Sobic010G069900 Sobic010G069900 Sobic001G483600--Sobic010G069900 Sobic004G078800 Sobic004G078800 Sobic001G483600--Sobic004G078800 Sobic001G006201 Sobic001G006201 Sobic001G483600--Sobic001G006201 Sobic001G360700 Sobic001G360700 Sobic001G483600--Sobic001G360700 Sobic002G203900 Sobic002G203900 Sobic001G483600--Sobic002G203900 Sobic010G192366--Sobic010G192432 Sobic010G192366--Sobic010G097200 Sobic010G192366--Sobic001G483600 Sobic004G119800 Sobic004G119800 Sobic010G192366--Sobic004G119800 Sobic008G037900 Sobic008G037900 Sobic010G192366--Sobic008G037900 Sobic006G196400 Sobic006G196400 Sobic010G192366--Sobic006G196400 Sobic005G080600 Sobic005G080600 Sobic010G192366--Sobic005G080600 Sobic006G135300 Sobic006G135300 Sobic010G192366--Sobic006G135300 Sobic007G100700 Sobic007G100700 Sobic010G192366--Sobic007G100700 Sobic010G192432--Sobic010G192366 Sobic010G192432--Sobic004G078800 Sobic010G192432--Sobic003G227700 Sobic010G192432--Sobic001G483600 Sobic001G067100 Sobic001G067100 Sobic010G192432--Sobic001G067100 Sobic010G192432--Sobic006G135300 Sobic010G192432--Sobic010G097200 Sobic010G071400 Sobic010G071400 Sobic010G192432--Sobic010G071400 Sobic010G192432--Sobic007G100700 Sobic003G227700--Sobic010G069900 Sobic003G257400 Sobic003G257400 Sobic003G227700--Sobic003G257400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic004G106100 Sobic004G106100 Sobic003G227700--Sobic004G106100 Sobic003G167300 Sobic003G167300 Sobic010G097200--Sobic003G167300 Sobic006G205700 Sobic006G205700 Sobic010G097200--Sobic006G205700 Sobic010G097200--Sobic008G037900 Sobic007G037600 Sobic007G037600 Sobic010G097200--Sobic007G037600 Sobic005G033000 Sobic005G033000 Sobic010G097200--Sobic005G033000 Sobic009G065700 Sobic009G065700 Sobic010G097200--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic010G097200--Sobic003G441800 Sobic010G097200--Sobic004G119800 Sobic004G014600 Sobic004G014600 Sobic010G097200--Sobic004G014600 Sobic010G069900--Sobic003G227700 Sobic010G069900--Sobic010G071400 Sobic004G212300 Sobic004G212300 Sobic010G069900--Sobic004G212300 Sobic010G069900--Sobic010G192432 Sobic010G069900--Sobic001G006201 Sobic010G069900--Sobic001G483600 Sobic009G102600 Sobic009G102600 Sobic010G069900--Sobic009G102600 Sobic010G101900 Sobic010G101900 Sobic010G069900--Sobic010G101900 Sobic010G069900--Sobic004G078800 Sobic004G078800--Sobic010G192432 Sobic004G078800--Sobic010G192366 Sobic004G078800--Sobic001G483600 Sobic004G078800--Sobic010G069900 Sobic003G095400 Sobic003G095400 Sobic004G078800--Sobic003G095400 Sobic004G078800--Sobic010G071400 Sobic004G078800--Sobic003G227700 Sobic004G177000 Sobic004G177000 Sobic004G078800--Sobic004G177000 Sobic002G318200 Sobic002G318200 Sobic004G078800--Sobic002G318200 Sobic001G006201--Sobic003G227700 Sobic001G006201--Sobic003G257400 Sobic003G064800 Sobic003G064800 Sobic001G006201--Sobic003G064800 Sobic004G306900 Sobic004G306900 Sobic001G006201--Sobic004G306900 Sobic001G006201--Sobic010G192366 Sobic001G238000 Sobic001G238000 Sobic001G006201--Sobic001G238000 Sobic001G006201--Sobic010G071400 Sobic001G006201--Sobic010G097200 Sobic001G421000 Sobic001G421000 Sobic001G006201--Sobic001G421000 Sobic004G047600 Sobic004G047600 Sobic001G360700--Sobic004G047600 Sobic007G047300 Sobic007G047300 Sobic001G360700--Sobic007G047300 Sobic002G167600 Sobic002G167600 Sobic001G360700--Sobic002G167600 Sobic001G360700--Sobic002G203900 Sobic001G471800 Sobic001G471800 Sobic001G360700--Sobic001G471800 Sobic002G254900 Sobic002G254900 Sobic001G360700--Sobic002G254900 Sobic002G146000 Sobic002G146000 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G072600 Sobic001G072600 Sobic001G360700--Sobic001G072600 Sobic002G203900--Sobic001G360700 Sobic002G203900--Sobic002G167600 Sobic002G203900--Sobic004G047600 Sobic007G090472 Sobic007G090472 Sobic002G203900--Sobic007G090472 Sobic002G203900--Sobic002G146000 Sobic002G203900--Sobic006G135300 Sobic002G203900--Sobic007G047300 Sobic001G360800 Sobic001G360800 Sobic002G203900--Sobic001G360800 Sobic007G073000 Sobic007G073000 Sobic002G203900--Sobic007G073000
Octagon: transcription factors


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