Gene annotation
Transcriptome id Sobic.002G203900.2,Sobic.002G203900.3,Sobic.002G203900.1
Synonym Sb02g024850
Functional annotation methyladenine glycosylase, putative, expressed
UniProt A0A1W0W593 , C5XCV6 , A0A1W0W585
Pfam PF03352
Panther DB PTHR31116 PTHR31116:SF7
NCBI CDD -
KEGG Orthology K01246; DNA-3-methyladenine glycosylase I
Gene Ontology GO:0008725; DNA-3-methyladenine glycosylase activity GO:0006284base-excision repair


Orthologs (automatic annotation)
TAIR AT5G57970 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os09g25290.1 : methyladenine glycosylase, putative, expressed
MaizeGDB (Corn) Zm00025a013928 , Zm00025a047014
Brachypodium KQJ90264
Barley HORVU5Hr1G065200.12 , HORVU5Hr1G065200.13 , HORVU5Hr1G065200.10 , HORVU5Hr1G065200.11 , HORVU5Hr1G065200.16 , HORVU5Hr1G065200.17 , HORVU5Hr1G065200.14 , HORVU5Hr1G065200.15 , HORVU5Hr1G065200.8 , HORVU5Hr1G065200.9 , HORVU5Hr1G065200.1 , HORVU5Hr1G065200.2 , HORVU5Hr1G065200.3 , HORVU5Hr1G065200.4 , HORVU5Hr1G065200.5 , HORVU5Hr1G065200.6 , HORVU5Hr1G065200.7
Wheat TraesCS5B02G223100 , TraesCS5A02G224300 , TraesCS5D02G231700
Populus -


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cDNA sequences
Sobic.002G203900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
2 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
3 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
4 Sobic.007G090472 - -
5 Sobic.002G146000 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
6 Sobic.006G135300 expressed protein -
7 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
8 Sobic.001G360800 cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
9 Sobic.007G073000 - -
10 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
11 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
12 Sobic.002G195600 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
13 Sobic.010G028100 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
14 Sobic.006G196400 U-box, putative, expressed -
15 Sobic.009G034300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
16 Sobic.006G019700 transferase family protein, putative, expressed -
17 Sobic.004G193500 expressed protein -
18 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.004G119800 expansin precursor, putative, expressed -
20 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -


Gene co-expression network
sample Sobic002G203900 Sobic002G203900 Sobic001G360700 Sobic001G360700 Sobic002G203900--Sobic001G360700 Sobic002G167600 Sobic002G167600 Sobic002G203900--Sobic002G167600 Sobic004G047600 Sobic004G047600 Sobic002G203900--Sobic004G047600 Sobic007G090472 Sobic007G090472 Sobic002G203900--Sobic007G090472 Sobic002G146000 Sobic002G146000 Sobic002G203900--Sobic002G146000 Sobic006G135300 Sobic006G135300 Sobic002G203900--Sobic006G135300 Sobic007G047300 Sobic007G047300 Sobic002G203900--Sobic007G047300 Sobic001G360800 Sobic001G360800 Sobic002G203900--Sobic001G360800 Sobic007G073000 Sobic007G073000 Sobic002G203900--Sobic007G073000 Sobic001G360700--Sobic004G047600 Sobic001G360700--Sobic007G047300 Sobic001G360700--Sobic002G167600 Sobic001G360700--Sobic002G203900 Sobic001G471800 Sobic001G471800 Sobic001G360700--Sobic001G471800 Sobic002G254900 Sobic002G254900 Sobic001G360700--Sobic002G254900 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G072600 Sobic001G072600 Sobic001G360700--Sobic001G072600 Sobic002G167600--Sobic001G360700 Sobic006G144600 Sobic006G144600 Sobic002G167600--Sobic006G144600 Sobic002G167600--Sobic004G047600 Sobic001G406700 Sobic001G406700 Sobic002G167600--Sobic001G406700 Sobic002G167600--Sobic002G203900 Sobic009G170500 Sobic009G170500 Sobic002G167600--Sobic009G170500 Sobic002G167600--Sobic002G254900 Sobic002G167600--Sobic001G072600 Sobic010G180100 Sobic010G180100 Sobic002G167600--Sobic010G180100 Sobic004G047600--Sobic001G360700 Sobic003G352700 Sobic003G352700 Sobic004G047600--Sobic003G352700 Sobic004G047600--Sobic007G047300 Sobic004G047600--Sobic001G471800 Sobic004G047600--Sobic002G146000 Sobic004G047600--Sobic002G167600 Sobic004G047600--Sobic002G254900 Sobic004G047600--Sobic002G203900 Sobic009G162300 Sobic009G162300 Sobic004G047600--Sobic009G162300 Sobic010G028100 Sobic010G028100 Sobic007G090472--Sobic010G028100 Sobic007G090472--Sobic007G073000 Sobic001G360500 Sobic001G360500 Sobic007G090472--Sobic001G360500 Sobic010G082000 Sobic010G082000 Sobic007G090472--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic007G090472--Sobic006G092700 Sobic007G090472--Sobic006G135300 Sobic006G229100 Sobic006G229100 Sobic007G090472--Sobic006G229100 Sobic001G503000 Sobic001G503000 Sobic007G090472--Sobic001G503000 Sobic003G215300 Sobic003G215300 Sobic007G090472--Sobic003G215300 Sobic002G146000--Sobic007G073000 Sobic002G146000--Sobic006G092700 Sobic007G037600 Sobic007G037600 Sobic002G146000--Sobic007G037600 Sobic003G353200 Sobic003G353200 Sobic002G146000--Sobic003G353200 Sobic003G000100 Sobic003G000100 Sobic002G146000--Sobic003G000100 Sobic006G085700 Sobic006G085700 Sobic002G146000--Sobic006G085700 Sobic010G031700 Sobic010G031700 Sobic002G146000--Sobic010G031700 Sobic002G146000--Sobic003G215300 Sobic004G106100 Sobic004G106100 Sobic002G146000--Sobic004G106100 Sobic006G135300--Sobic006G092700 Sobic006G135300--Sobic010G082000 Sobic006G135300--Sobic007G073000 Sobic006G135300--Sobic010G028100 Sobic006G019700 Sobic006G019700 Sobic006G135300--Sobic006G019700 Sobic010G152400 Sobic010G152400 Sobic006G135300--Sobic010G152400 Sobic003G322100 Sobic003G322100 Sobic006G135300--Sobic003G322100 Sobic004G306900 Sobic004G306900 Sobic006G135300--Sobic004G306900 Sobic006G135300--Sobic002G146000 Sobic007G047300--Sobic001G360700 Sobic007G047300--Sobic004G047600 Sobic007G047300--Sobic009G162300 Sobic007G047300--Sobic003G352700 Sobic007G047300--Sobic001G471800 Sobic004G111100 Sobic004G111100 Sobic007G047300--Sobic004G111100 Sobic007G047300--Sobic002G146000 Sobic002G207200 Sobic002G207200 Sobic007G047300--Sobic002G207200 Sobic007G047300--Sobic002G203900 Sobic004G221300 Sobic004G221300 Sobic001G360800--Sobic004G221300 Sobic009G034300 Sobic009G034300 Sobic001G360800--Sobic009G034300 Sobic001G360800--Sobic002G203900 Sobic001G360800--Sobic002G167600 Sobic006G036400 Sobic006G036400 Sobic001G360800--Sobic006G036400 Sobic001G409100 Sobic001G409100 Sobic001G360800--Sobic001G409100 Sobic001G224300 Sobic001G224300 Sobic001G360800--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic001G360800--Sobic003G296400 Sobic001G360800--Sobic002G207200 Sobic007G073000--Sobic006G092700 Sobic007G073000--Sobic003G322100 Sobic007G073000--Sobic003G215300 Sobic007G073000--Sobic002G146000 Sobic007G073000--Sobic006G135300 Sobic002G195600 Sobic002G195600 Sobic007G073000--Sobic002G195600 Sobic007G073000--Sobic010G082000 Sobic007G073000--Sobic007G090472 Sobic003G240400 Sobic003G240400 Sobic007G073000--Sobic003G240400
Octagon: transcription factors


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