Gene annotation
Transcriptome id Sobic.005G022200.3,Sobic.005G022200.5,Sobic.005G022200.6,Sobic.005G022200.4,Sobic.005G022200.2
Synonym AtXRN3, XRN3, Sb05g001880
Functional annotation XRN 5-3 exonuclease N-terminus family protein, expressed
UniProt A0A1B6PPS0 , A0A1B6PPS5
Pfam PF03159
Panther DB PTHR12341 PTHR12341:SF39
NCBI CDD -
KEGG Orthology K12619; XRN2, 5'-3' exoribonuclease 2
Gene Ontology GO:0004527; exonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G42540 : exoribonuclease 2,exoribonuclease 4
RAP-DB (Rice) LOC_Os02g28074.1 : XRN 5-3 exonuclease N-terminus family protein, expressed
MaizeGDB (Corn) Zm00025a056546
Brachypodium -
Barley HORVU5Hr1G082940.1 , HORVU5Hr1G082940.2 , HORVU5Hr1G082940.3 , HORVU5Hr1G082940.4 , HORVU5Hr1G082940.5 , HORVU5Hr1G082940.6 , HORVU5Hr1G082940.7 , HORVU5Hr1G082940.8 , HORVU5Hr1G082940.9 , HORVU5Hr1G082940.23 , HORVU5Hr1G082940.22 , HORVU5Hr1G082940.21 , HORVU5Hr1G082940.20 , HORVU5Hr1G082940.27 , HORVU5Hr1G082940.26 , HORVU5Hr1G082940.24 , HORVU5Hr1G082940.29 , HORVU5Hr1G082940.28 , HORVU5Hr1G082940.48 , HORVU5Hr1G082940.30 , HORVU5Hr1G082940.31 , HORVU5Hr1G082940.32 , HORVU5Hr1G082940.33 , HORVU5Hr1G082940.34 , HORVU5Hr1G082940.35 , HORVU5Hr1G082940.36 , HORVU5Hr1G082940.37 , HORVU5Hr1G082940.38 , HORVU5Hr1G082940.39 , HORVU5Hr1G082940.18 , HORVU5Hr1G082940.19 , HORVU5Hr1G082940.12 , HORVU5Hr1G082940.13 , HORVU5Hr1G082940.10 , HORVU5Hr1G082940.11 , HORVU5Hr1G082940.16 , HORVU5Hr1G082940.17 , HORVU5Hr1G082940.14 , HORVU5Hr1G082940.69 , HORVU5Hr1G082940.68 , HORVU5Hr1G082940.66 , HORVU5Hr1G082940.65 , HORVU5Hr1G082940.64 , HORVU5Hr1G082940.63 , HORVU5Hr1G082940.62 , HORVU5Hr1G082940.61 , HORVU5Hr1G082940.60 , HORVU5Hr1G082940.70 , HORVU5Hr1G082940.15 , HORVU5Hr1G082940.41 , HORVU5Hr1G082940.40 , HORVU5Hr1G082940.43 , HORVU5Hr1G082940.42 , HORVU5Hr1G082940.45 , HORVU5Hr1G082940.44 , HORVU5Hr1G082940.47 , HORVU5Hr1G082940.46 , HORVU5Hr1G082940.49 , HORVU5Hr1G082940.57 , HORVU5Hr1G082940.52 , HORVU5Hr1G082940.53 , HORVU5Hr1G082940.50 , HORVU5Hr1G082940.51 , HORVU5Hr1G082940.58 , HORVU5Hr1G082940.59
Wheat TraesCS5A02G327200 , TraesCS4B02G116100 , TraesCS5B02G327400 , TraesCS5B02G327400 , TraesCS4D02G113700 , TraesCS5D02G333400 , TraesCS5D02G333400 , TraesCS5D02G333400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G081800 RGH1A, putative, expressed -
2 Sobic.002G081850 - -
3 Sobic.003G161400 powdery mildew resistance protein PM3A, putative, expressed -
4 Sobic.010G213600 histidine kinase, putative, expressed -
5 Sobic.010G242800 disease resistance protein RGA3, putative, expressed -
6 Sobic.005G066366 - -
7 Sobic.005G197350 - -
8 Sobic.008G033100 protein kinase domain containing protein, expressed K17302: COPB2, coatomer subunit beta'
9 Sobic.004G339800 phosphate transporter 1, putative, expressed -
10 Sobic.005G110511 - -
11 Sobic.002G019000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
12 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
13 Sobic.005G066500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.005G182900 NBS-LRR disease resistance protein, putative, expressed -
15 Sobic.010G126800 lectin-like receptor kinase 7, putative, expressed -
16 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
17 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
18 Sobic.007G119750 - -
19 Sobic.001G293100 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G272600 powdery mildew resistance protein PM3b, putative, expressed -


Gene co-expression network
sample Sobic005G022200 Sobic005G022200 Sobic002G081800 Sobic002G081800 Sobic005G022200--Sobic002G081800 Sobic002G081850 Sobic002G081850 Sobic005G022200--Sobic002G081850 Sobic003G161400 Sobic003G161400 Sobic005G022200--Sobic003G161400 Sobic010G213600 Sobic010G213600 Sobic005G022200--Sobic010G213600 Sobic010G242800 Sobic010G242800 Sobic005G022200--Sobic010G242800 Sobic005G066366 Sobic005G066366 Sobic005G022200--Sobic005G066366 Sobic005G197350 Sobic005G197350 Sobic005G022200--Sobic005G197350 Sobic008G033100 Sobic008G033100 Sobic005G022200--Sobic008G033100 Sobic004G339800 Sobic004G339800 Sobic005G022200--Sobic004G339800 Sobic002G081800--Sobic002G081850 Sobic002G081800--Sobic005G022200 Sobic005G110511 Sobic005G110511 Sobic002G081800--Sobic005G110511 Sobic002G081800--Sobic005G066366 Sobic002G081800--Sobic010G242800 Sobic002G081800--Sobic005G197350 Sobic002G081800--Sobic003G161400 Sobic005G066500 Sobic005G066500 Sobic002G081800--Sobic005G066500 Sobic002G081800--Sobic004G339800 Sobic002G081850--Sobic005G197350 Sobic002G081850--Sobic005G066366 Sobic002G081850--Sobic005G110511 Sobic002G081850--Sobic005G066500 Sobic005G066300 Sobic005G066300 Sobic002G081850--Sobic005G066300 Sobic002G081850--Sobic002G081800 Sobic002G411000 Sobic002G411000 Sobic002G081850--Sobic002G411000 Sobic004G312500 Sobic004G312500 Sobic002G081850--Sobic004G312500 Sobic005G065700 Sobic005G065700 Sobic002G081850--Sobic005G065700 Sobic003G161400--Sobic008G033100 Sobic003G161400--Sobic010G242800 Sobic001G293100 Sobic001G293100 Sobic003G161400--Sobic001G293100 Sobic005G182900 Sobic005G182900 Sobic003G161400--Sobic005G182900 Sobic007G015000 Sobic007G015000 Sobic003G161400--Sobic007G015000 Sobic010G268700 Sobic010G268700 Sobic003G161400--Sobic010G268700 Sobic003G161400--Sobic010G213600 Sobic001G415100 Sobic001G415100 Sobic003G161400--Sobic001G415100 Sobic005G097900 Sobic005G097900 Sobic003G161400--Sobic005G097900 Sobic010G213600--Sobic008G033100 Sobic010G213600--Sobic005G065700 Sobic002G019000 Sobic002G019000 Sobic010G213600--Sobic002G019000 Sobic004G014600 Sobic004G014600 Sobic010G213600--Sobic004G014600 Sobic010G213600--Sobic005G182900 Sobic009G165100 Sobic009G165100 Sobic010G213600--Sobic009G165100 Sobic003G079100 Sobic003G079100 Sobic010G213600--Sobic003G079100 Sobic010G213600--Sobic003G161400 Sobic001G342000 Sobic001G342000 Sobic010G213600--Sobic001G342000 Sobic010G242800--Sobic008G033100 Sobic010G242800--Sobic005G182900 Sobic010G242800--Sobic003G161400 Sobic010G242800--Sobic001G293100 Sobic010G242800--Sobic005G066366 Sobic010G242800--Sobic005G110511 Sobic010G242800--Sobic005G097900 Sobic007G064900 Sobic007G064900 Sobic010G242800--Sobic007G064900 Sobic002G029500 Sobic002G029500 Sobic010G242800--Sobic002G029500 Sobic005G066366--Sobic010G242800 Sobic005G066366--Sobic005G110511 Sobic005G066366--Sobic005G197350 Sobic005G197400 Sobic005G197400 Sobic005G066366--Sobic005G197400 Sobic005G066366--Sobic008G033100 Sobic005G197500 Sobic005G197500 Sobic005G066366--Sobic005G197500 Sobic005G066366--Sobic005G182900 Sobic005G066366--Sobic005G066500 Sobic005G066366--Sobic003G161400 Sobic005G197350--Sobic005G066366 Sobic005G197350--Sobic005G066500 Sobic005G066200 Sobic005G066200 Sobic005G197350--Sobic005G066200 Sobic005G197350--Sobic002G081850 Sobic005G197350--Sobic005G110511 Sobic007G119750 Sobic007G119750 Sobic005G197350--Sobic007G119750 Sobic005G197350--Sobic002G019000 Sobic005G197350--Sobic010G242800 Sobic005G197350--Sobic005G065700 Sobic008G033100--Sobic010G242800 Sobic008G033100--Sobic005G182900 Sobic008G033100--Sobic001G293100 Sobic008G033100--Sobic003G161400 Sobic008G033100--Sobic005G097900 Sobic008G033100--Sobic002G019000 Sobic008G033100--Sobic010G213600 Sobic008G033100--Sobic002G029500 Sobic008G033100--Sobic001G415100 Sobic004G339800--Sobic003G079100 Sobic004G339800--Sobic002G029500 Sobic002G197000 Sobic002G197000 Sobic004G339800--Sobic002G197000 Sobic003G083800 Sobic003G083800 Sobic004G339800--Sobic003G083800 Sobic004G339800--Sobic005G110511 Sobic006G108300 Sobic006G108300 Sobic004G339800--Sobic006G108300 Sobic004G339800--Sobic007G064900 Sobic009G084400 Sobic009G084400 Sobic004G339800--Sobic009G084400 Sobic004G339800--Sobic004G312500
Octagon: transcription factors


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