Gene annotation
Transcriptome id Sobic.003G278700.1
Synonym Sb03g033050
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt C5XIC4
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF104
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24450 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os01g52160.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038981 , Zm00025a027755
Brachypodium -
Barley HORVU3Hr1G068200.1 , HORVU3Hr1G068200.3 , HORVU3Hr1G068200.2
Wheat TraesCS3B02G322900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
3 Sobic.001G460300 expressed protein -
4 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
5 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
6 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
7 Sobic.010G272101 - -
8 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
10 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
11 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
12 Sobic.008G040900 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
13 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
14 Sobic.006G026400 - -
15 Sobic.006G078300 - -
16 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
18 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
19 Sobic.002G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed -
20 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase


Gene co-expression network
sample Sobic003G278700 Sobic003G278700 Sobic009G099000 Sobic009G099000 Sobic003G278700--Sobic009G099000 Sobic001G157400 Sobic001G157400 Sobic003G278700--Sobic001G157400 Sobic001G460300 Sobic001G460300 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic005G231700 Sobic005G231700 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G227600 Sobic003G227600 Sobic003G278700--Sobic003G227600 Sobic009G099000--Sobic003G278700 Sobic009G099000--Sobic001G157400 Sobic006G026400 Sobic006G026400 Sobic009G099000--Sobic006G026400 Sobic009G099000--Sobic001G050800 Sobic009G099000--Sobic001G460300 Sobic008G040900 Sobic008G040900 Sobic009G099000--Sobic008G040900 Sobic006G194600 Sobic006G194600 Sobic009G099000--Sobic006G194600 Sobic009G099000--Sobic005G231700 Sobic004G172100 Sobic004G172100 Sobic009G099000--Sobic004G172100 Sobic001G157400--Sobic001G050800 Sobic002G023900 Sobic002G023900 Sobic001G157400--Sobic002G023900 Sobic001G157400--Sobic006G026400 Sobic002G068800 Sobic002G068800 Sobic001G157400--Sobic002G068800 Sobic001G157400--Sobic003G278700 Sobic001G157400--Sobic003G227600 Sobic006G032200 Sobic006G032200 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic009G170100 Sobic009G170100 Sobic001G157400--Sobic009G170100 Sobic001G460300--Sobic003G278700 Sobic003G032900 Sobic003G032900 Sobic001G460300--Sobic003G032900 Sobic001G460300--Sobic009G099000 Sobic005G121200 Sobic005G121200 Sobic001G460300--Sobic005G121200 Sobic001G460300--Sobic001G157400 Sobic001G460300--Sobic003G227600 Sobic002G337800 Sobic002G337800 Sobic001G460300--Sobic002G337800 Sobic009G216900 Sobic009G216900 Sobic001G460300--Sobic009G216900 Sobic002G325900 Sobic002G325900 Sobic001G460300--Sobic002G325900 Sobic001G050800--Sobic001G157400 Sobic001G050800--Sobic009G170100 Sobic001G050800--Sobic006G194600 Sobic001G050800--Sobic006G026400 Sobic001G050800--Sobic006G032200 Sobic004G281200 Sobic004G281200 Sobic001G050800--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic001G050800--Sobic004G244300 Sobic004G244100 Sobic004G244100 Sobic001G050800--Sobic004G244100 Sobic001G050800--Sobic002G068800 Sobic006G087900 Sobic006G087900 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic010G080400 Sobic010G080400 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic009G030200--Sobic001G050800 Sobic009G030200--Sobic001G157400 Sobic009G030200--Sobic003G278700 Sobic010G071700 Sobic010G071700 Sobic009G030200--Sobic010G071700 Sobic009G030200--Sobic005G231700 Sobic009G030200--Sobic003G227600 Sobic003G342600 Sobic003G342600 Sobic009G030200--Sobic003G342600 Sobic009G159900 Sobic009G159900 Sobic009G030200--Sobic009G159900 Sobic009G030200--Sobic006G032200 Sobic001G081600 Sobic001G081600 Sobic010G272101--Sobic001G081600 Sobic003G131500 Sobic003G131500 Sobic010G272101--Sobic003G131500 Sobic002G217100 Sobic002G217100 Sobic010G272101--Sobic002G217100 Sobic010G272101--Sobic002G068800 Sobic010G272101--Sobic001G063600 Sobic010G272101--Sobic006G032200 Sobic010G272101--Sobic001G050800 Sobic010G016500 Sobic010G016500 Sobic010G272101--Sobic010G016500 Sobic010G272101--Sobic004G244300 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic001G063600--Sobic009G170100 Sobic001G063600--Sobic003G032900 Sobic001G063600--Sobic002G068800 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic009G128300 Sobic009G128300 Sobic003G227600--Sobic009G128300 Sobic003G227600--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G227600--Sobic003G233900 Sobic002G182800 Sobic002G182800 Sobic003G227600--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G227600--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G227600--Sobic002G342100 Sobic001G509400 Sobic001G509400 Sobic003G227600--Sobic001G509400 Sobic001G075101 Sobic001G075101 Sobic003G227600--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic003G227600--Sobic002G331450
Octagon: transcription factors


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