Gene annotation
Transcriptome id Sobic.010G080400.1
Synonym Sb10g006980
Functional annotation AP2 domain containing protein, expressed
UniProt C5Z6F4
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G21910 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g10780.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001699 , Zm00025a033087 , Zm00025a042509 , Zm00025a022237 , Zm00025a049596
Brachypodium KQK01731 , KQK22459 , KQK19045
Barley HORVU6Hr1G080340.12 , HORVU6Hr1G080340.11 , HORVU4Hr1G061340.1 , HORVU6Hr1G080340.9
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.001G476400 - -
3 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
5 Sobic.003G296700 protein kinase domain containing protein, expressed -
6 Sobic.004G278200 DUF581 domain containing protein, expressed -
7 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
8 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
9 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
11 Sobic.003G338900 expressed protein -
12 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
13 Sobic.002G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed -
14 Sobic.001G398500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed -
15 Sobic.003G032900 expressed protein -
16 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
17 Sobic.004G283300 AP2 domain containing protein, expressed -
18 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
19 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
20 Sobic.010G076700 expressed protein -


Gene co-expression network
sample Sobic010G080400 Sobic010G080400 Sobic001G063600 Sobic001G063600 Sobic010G080400--Sobic001G063600 Sobic001G476400 Sobic001G476400 Sobic010G080400--Sobic001G476400 Sobic010G076600 Sobic010G076600 Sobic010G080400--Sobic010G076600 Sobic005G231700 Sobic005G231700 Sobic010G080400--Sobic005G231700 Sobic003G296700 Sobic003G296700 Sobic010G080400--Sobic003G296700 Sobic004G278200 Sobic004G278200 Sobic010G080400--Sobic004G278200 Sobic008G159100 Sobic008G159100 Sobic010G080400--Sobic008G159100 Sobic006G087900 Sobic006G087900 Sobic010G080400--Sobic006G087900 Sobic001G080300 Sobic001G080300 Sobic010G080400--Sobic001G080300 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic001G476400--Sobic010G080400 Sobic006G095600 Sobic006G095600 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic006G184400 Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic001G209800 Sobic001G209800 Sobic010G076600--Sobic001G209800 Sobic010G076600--Sobic001G476400 Sobic010G076600--Sobic001G473900 Sobic009G217600 Sobic009G217600 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic008G036000 Sobic008G036000 Sobic010G076600--Sobic008G036000 Sobic010G076600--Sobic006G095600 Sobic010G076600--Sobic003G296700 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic001G516600 Sobic001G516600 Sobic003G296700--Sobic001G516600 Sobic003G296700--Sobic009G208800 Sobic009G220200 Sobic009G220200 Sobic003G296700--Sobic009G220200 Sobic001G341600 Sobic001G341600 Sobic003G296700--Sobic001G341600 Sobic003G296700--Sobic009G217600 Sobic003G296700--Sobic010G076600 Sobic003G296700--Sobic006G095600 Sobic002G374100 Sobic002G374100 Sobic003G296700--Sobic002G374100 Sobic002G294700 Sobic002G294700 Sobic003G296700--Sobic002G294700 Sobic003G373150 Sobic003G373150 Sobic004G278200--Sobic003G373150 Sobic007G166900 Sobic007G166900 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic004G278200--Sobic001G080300 Sobic002G427400 Sobic002G427400 Sobic004G278200--Sobic002G427400 Sobic004G321000 Sobic004G321000 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic008G159100--Sobic001G063600 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic008G159100--Sobic001G051600 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic008G159100--Sobic005G231700 Sobic004G245850 Sobic004G245850 Sobic008G159100--Sobic004G245850 Sobic008G159100--Sobic001G080300 Sobic006G087900--Sobic005G231700 Sobic002G362900 Sobic002G362900 Sobic006G087900--Sobic002G362900 Sobic006G087900--Sobic003G296700 Sobic006G087900--Sobic001G063600 Sobic006G076201 Sobic006G076201 Sobic006G087900--Sobic006G076201 Sobic006G087900--Sobic010G080400 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic006G087900--Sobic009G220200 Sobic001G080300--Sobic002G427400 Sobic001G080300--Sobic004G278200 Sobic001G080300--Sobic007G166900 Sobic001G080300--Sobic008G159100 Sobic001G080300--Sobic003G032900 Sobic001G080300--Sobic010G080400 Sobic001G080300--Sobic001G063600 Sobic001G080300--Sobic003G373150 Sobic005G115800 Sobic005G115800 Sobic001G080300--Sobic005G115800
Octagon: transcription factors


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