Gene annotation
Transcriptome id Sobic.003G198400.1
Synonym Sb03g026090
Functional annotation -
UniProt A0A1W0VY72
Pfam PF05553
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57070 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os01g40190.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a028505 , Zm00025a038383
Brachypodium KQK08452
Barley HORVU3Hr1G050310.1 , HORVU3Hr1G050310.3
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G198400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
2 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
3 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
4 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
5 Sobic.007G180900 BAG domain-containing protein, putative, expressed -
6 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
7 Sobic.004G257800 chloride transporter, chloride channel family, putative, expressed -
8 Sobic.001G460300 expressed protein -
9 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.004G261200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
12 Sobic.003G144600 zinc finger, C3HC4 type, putative, expressed -
13 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
14 Sobic.004G278200 DUF581 domain containing protein, expressed -
15 Sobic.001G469600 "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed -
16 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
17 Sobic.009G188100 serine/threonine-protein kinase receptor precursor, putative, expressed -
18 Sobic.003G040800 WRKY102, expressed -
19 Sobic.003G373150 - -
20 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -


Gene co-expression network
sample Sobic003G198400 Sobic003G198400 Sobic003G361300 Sobic003G361300 Sobic003G198400--Sobic003G361300 Sobic003G278700 Sobic003G278700 Sobic003G198400--Sobic003G278700 Sobic001G450800 Sobic001G450800 Sobic003G198400--Sobic001G450800 Sobic001G157400 Sobic001G157400 Sobic003G198400--Sobic001G157400 Sobic007G180900 Sobic007G180900 Sobic003G198400--Sobic007G180900 Sobic009G099000 Sobic009G099000 Sobic003G198400--Sobic009G099000 Sobic004G257800 Sobic004G257800 Sobic003G198400--Sobic004G257800 Sobic001G460300 Sobic001G460300 Sobic003G198400--Sobic001G460300 Sobic009G216900 Sobic009G216900 Sobic003G198400--Sobic009G216900 Sobic003G361300--Sobic001G450800 Sobic001G430700 Sobic001G430700 Sobic003G361300--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic003G361300--Sobic003G198150 Sobic008G044750 Sobic008G044750 Sobic003G361300--Sobic008G044750 Sobic003G227600 Sobic003G227600 Sobic003G361300--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic003G361300--Sobic003G040800 Sobic003G361300--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G361300--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic003G361300--Sobic009G128300 Sobic003G278700--Sobic009G099000 Sobic003G278700--Sobic001G157400 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic005G231700 Sobic005G231700 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G278700--Sobic003G227600 Sobic001G450800--Sobic003G361300 Sobic001G450800--Sobic001G430700 Sobic001G450800--Sobic003G198150 Sobic001G106000 Sobic001G106000 Sobic001G450800--Sobic001G106000 Sobic001G450800--Sobic003G040800 Sobic001G450800--Sobic003G227600 Sobic001G450800--Sobic008G044750 Sobic001G450800--Sobic009G216900 Sobic004G285100 Sobic004G285100 Sobic001G450800--Sobic004G285100 Sobic001G157400--Sobic001G050800 Sobic002G023900 Sobic002G023900 Sobic001G157400--Sobic002G023900 Sobic006G026400 Sobic006G026400 Sobic001G157400--Sobic006G026400 Sobic002G068800 Sobic002G068800 Sobic001G157400--Sobic002G068800 Sobic001G157400--Sobic003G278700 Sobic001G157400--Sobic003G227600 Sobic006G032200 Sobic006G032200 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic009G170100 Sobic009G170100 Sobic001G157400--Sobic009G170100 Sobic003G144600 Sobic003G144600 Sobic007G180900--Sobic003G144600 Sobic002G075500 Sobic002G075500 Sobic007G180900--Sobic002G075500 Sobic002G187400 Sobic002G187400 Sobic007G180900--Sobic002G187400 Sobic002G118700 Sobic002G118700 Sobic007G180900--Sobic002G118700 Sobic004G261200 Sobic004G261200 Sobic007G180900--Sobic004G261200 Sobic007G180900--Sobic004G257800 Sobic007G180900--Sobic003G198400 Sobic007G180900--Sobic009G099000 Sobic003G353400 Sobic003G353400 Sobic007G180900--Sobic003G353400 Sobic009G099000--Sobic003G278700 Sobic009G099000--Sobic001G157400 Sobic009G099000--Sobic006G026400 Sobic009G099000--Sobic001G050800 Sobic009G099000--Sobic001G460300 Sobic008G040900 Sobic008G040900 Sobic009G099000--Sobic008G040900 Sobic006G194600 Sobic006G194600 Sobic009G099000--Sobic006G194600 Sobic009G099000--Sobic005G231700 Sobic004G172100 Sobic004G172100 Sobic009G099000--Sobic004G172100 Sobic006G156600 Sobic006G156600 Sobic004G257800--Sobic006G156600 Sobic004G257800--Sobic004G172100 Sobic004G257800--Sobic002G075500 Sobic001G108350 Sobic001G108350 Sobic004G257800--Sobic001G108350 Sobic002G372800 Sobic002G372800 Sobic004G257800--Sobic002G372800 Sobic004G257800--Sobic007G180900 Sobic007G009500 Sobic007G009500 Sobic004G257800--Sobic007G009500 Sobic004G257800--Sobic009G099000 Sobic005G110490 Sobic005G110490 Sobic004G257800--Sobic005G110490 Sobic001G460300--Sobic003G278700 Sobic003G032900 Sobic003G032900 Sobic001G460300--Sobic003G032900 Sobic001G460300--Sobic009G099000 Sobic005G121200 Sobic005G121200 Sobic001G460300--Sobic005G121200 Sobic001G460300--Sobic001G157400 Sobic001G460300--Sobic003G227600 Sobic002G337800 Sobic002G337800 Sobic001G460300--Sobic002G337800 Sobic001G460300--Sobic009G216900 Sobic002G325900 Sobic002G325900 Sobic001G460300--Sobic002G325900 Sobic009G216900--Sobic003G227600 Sobic009G216900--Sobic003G233900 Sobic009G216900--Sobic009G128300 Sobic009G216900--Sobic003G040800 Sobic002G182800 Sobic002G182800 Sobic009G216900--Sobic002G182800 Sobic002G342100 Sobic002G342100 Sobic009G216900--Sobic002G342100 Sobic001G509400 Sobic001G509400 Sobic009G216900--Sobic001G509400 Sobic009G216900--Sobic004G285100 Sobic003G079800 Sobic003G079800 Sobic009G216900--Sobic003G079800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.