Gene annotation
Transcriptome id Sobic.003G144600.1
Synonym
Functional annotation zinc finger, C3HC4 type, putative, expressed
UniProt A0A1B6Q376
Pfam PF12906 PF12428
Panther DB PTHR23012 PTHR23012:SF90
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G02610 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os01g19800.1 : zinc finger, C3HC4 type, putative, expressed
MaizeGDB (Corn) Zm00025a024296 , Zm00025a036106
Brachypodium -
Barley HORVU1Hr1G052850.3 , HORVU1Hr1G052850.2 , HORVU1Hr1G052850.1 , HORVU1Hr1G052850.7 , HORVU1Hr1G052850.6 , HORVU1Hr1G052850.5 , HORVU1Hr1G052850.4 , HORVU1Hr1G052850.9 , HORVU1Hr1G052850.12 , HORVU1Hr1G052850.11 , HORVU1Hr1G052850.17 , HORVU1Hr1G052850.15 , HORVU1Hr1G052850.19 , HORVU1Hr1G052850.18 , HORVU1Hr1G052850.10 , HORVU1Hr1G052850.22 , HORVU1Hr1G052850.23 , HORVU1Hr1G052850.20 , HORVU1Hr1G052850.26 , HORVU1Hr1G052850.27 , HORVU1Hr1G052850.24 , HORVU1Hr1G052850.28 , HORVU1Hr1G052850.21
Wheat TraesCS1B02G219700 , TraesCS1D02G209400 , TraesCS1A02G206100 , TraesCS1A02G206100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G180900 BAG domain-containing protein, putative, expressed -
2 Sobic.004G278200 DUF581 domain containing protein, expressed -
3 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
4 Sobic.004G261200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
6 Sobic.002G321600 - -
7 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.005G060766 - -
9 Sobic.003G032900 expressed protein -
10 Sobic.003G373150 - -
11 Sobic.003G293600 -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
12 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
13 Sobic.007G217300 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
14 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.001G442900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.005G115800 cytochrome P450, putative, expressed -
17 Sobic.007G137400 CSLA11 - cellulose synthase-like family A, expressed K13680: beta-mannan synthase
18 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
19 Sobic.004G331300 AP2 domain containing protein, expressed -
20 Sobic.003G198400 - -


Gene co-expression network
sample Sobic003G144600 Sobic003G144600 Sobic007G180900 Sobic007G180900 Sobic003G144600--Sobic007G180900 Sobic004G278200 Sobic004G278200 Sobic003G144600--Sobic004G278200 Sobic007G166900 Sobic007G166900 Sobic003G144600--Sobic007G166900 Sobic004G261200 Sobic004G261200 Sobic003G144600--Sobic004G261200 Sobic010G006700 Sobic010G006700 Sobic003G144600--Sobic010G006700 Sobic002G321600 Sobic002G321600 Sobic003G144600--Sobic002G321600 Sobic001G080300 Sobic001G080300 Sobic003G144600--Sobic001G080300 Sobic005G060766 Sobic005G060766 Sobic003G144600--Sobic005G060766 Sobic003G032900 Sobic003G032900 Sobic003G144600--Sobic003G032900 Sobic007G180900--Sobic003G144600 Sobic002G075500 Sobic002G075500 Sobic007G180900--Sobic002G075500 Sobic002G187400 Sobic002G187400 Sobic007G180900--Sobic002G187400 Sobic002G118700 Sobic002G118700 Sobic007G180900--Sobic002G118700 Sobic007G180900--Sobic004G261200 Sobic004G257800 Sobic004G257800 Sobic007G180900--Sobic004G257800 Sobic003G198400 Sobic003G198400 Sobic007G180900--Sobic003G198400 Sobic009G099000 Sobic009G099000 Sobic007G180900--Sobic009G099000 Sobic003G353400 Sobic003G353400 Sobic007G180900--Sobic003G353400 Sobic003G373150 Sobic003G373150 Sobic004G278200--Sobic003G373150 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic004G278200--Sobic001G080300 Sobic002G427400 Sobic002G427400 Sobic004G278200--Sobic002G427400 Sobic004G321000 Sobic004G321000 Sobic004G278200--Sobic004G321000 Sobic001G063600 Sobic001G063600 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic007G166900--Sobic010G006700 Sobic007G166900--Sobic002G427400 Sobic004G331300 Sobic004G331300 Sobic007G166900--Sobic004G331300 Sobic007G166900--Sobic003G373150 Sobic004G310600 Sobic004G310600 Sobic007G166900--Sobic004G310600 Sobic006G267900 Sobic006G267900 Sobic007G166900--Sobic006G267900 Sobic001G159850 Sobic001G159850 Sobic007G166900--Sobic001G159850 Sobic004G261200--Sobic003G144600 Sobic004G261200--Sobic004G278200 Sobic009G194200 Sobic009G194200 Sobic004G261200--Sobic009G194200 Sobic003G410700 Sobic003G410700 Sobic004G261200--Sobic003G410700 Sobic004G261200--Sobic007G180900 Sobic003G293600 Sobic003G293600 Sobic004G261200--Sobic003G293600 Sobic004G261200--Sobic001G063600 Sobic004G261200--Sobic003G032900 Sobic004G261200--Sobic007G166900 Sobic010G006700--Sobic004G331300 Sobic003G078501 Sobic003G078501 Sobic010G006700--Sobic003G078501 Sobic009G000700 Sobic009G000700 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic002G321600--Sobic007G166900 Sobic002G321600--Sobic010G006700 Sobic002G321600--Sobic004G310600 Sobic002G321600--Sobic004G331300 Sobic002G321600--Sobic001G159850 Sobic001G080300--Sobic002G427400 Sobic001G080300--Sobic004G278200 Sobic001G080300--Sobic007G166900 Sobic008G159100 Sobic008G159100 Sobic001G080300--Sobic008G159100 Sobic001G080300--Sobic003G032900 Sobic010G080400 Sobic010G080400 Sobic001G080300--Sobic010G080400 Sobic001G080300--Sobic001G063600 Sobic001G080300--Sobic003G373150 Sobic005G115800 Sobic005G115800 Sobic001G080300--Sobic005G115800 Sobic005G060766--Sobic007G166900 Sobic005G060766--Sobic003G144600 Sobic005G060766--Sobic010G006700 Sobic005G060766--Sobic002G321600 Sobic005G060766--Sobic004G331300 Sobic001G450800 Sobic001G450800 Sobic005G060766--Sobic001G450800 Sobic005G060766--Sobic009G000700 Sobic005G060766--Sobic001G159850 Sobic003G032900--Sobic001G063600 Sobic003G032900--Sobic004G278200 Sobic003G032900--Sobic002G427400 Sobic003G032900--Sobic008G159100 Sobic003G032900--Sobic001G080300 Sobic001G476400 Sobic001G476400 Sobic003G032900--Sobic001G476400 Sobic003G032900--Sobic003G373150 Sobic003G032900--Sobic010G080400 Sobic004G025000 Sobic004G025000 Sobic003G032900--Sobic004G025000
Octagon: transcription factors


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