Gene annotation
Transcriptome id Sobic.003G293600.1
Synonym CCD8, SbCCD8, MAX4, ATCCD8, CAROTENOID CLEAVAGE DIOXYGENASE 8, Sb03g034400
Functional annotation - (PubMedID : 34525227)
beta,beta-carotene 9,10-dioxygenase, putative, expressed
UniProt C5XK17
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF50
NCBI CDD KOG1285; Beta, beta-carotene 15,15'-dioxygenase and related enzymes
KEGG Orthology K17913; carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32810 : carotenoid cleavage dioxygenase 8
RAP-DB (Rice) LOC_Os01g54270.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a027552
Brachypodium KQK09708 , PNT72843 , PNT72842
Barley HORVU3Hr1G071170.5 , HORVU3Hr1G071170.4 , HORVU3Hr1G071170.1 , HORVU3Hr1G071170.3 , HORVU3Hr1G071170.2
Wheat TraesCS3B02G088400 , TraesCS3A02G074100 , TraesCS3B02G308000 , TraesCS3B02G308000 , TraesCS3D02G273500 , TraesCS3D02G273500 , TraesCS3A02G074200 , TraesCS3A02G274300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
2 Sobic.004G278200 DUF581 domain containing protein, expressed -
3 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
4 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
5 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
6 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
7 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
8 Sobic.003G373150 - -
9 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
10 Sobic.007G217300 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
11 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
12 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic003G293600 Sobic003G293600 Sobic009G258300 Sobic009G258300 Sobic003G293600--Sobic009G258300 Sobic004G278200 Sobic004G278200 Sobic003G293600--Sobic004G278200 Sobic007G166900 Sobic007G166900 Sobic003G293600--Sobic007G166900 Sobic006G267900 Sobic006G267900 Sobic003G293600--Sobic006G267900 Sobic010G006700 Sobic010G006700 Sobic003G293600--Sobic010G006700 Sobic002G427400 Sobic002G427400 Sobic003G293600--Sobic002G427400 Sobic001G125100 Sobic001G125100 Sobic003G293600--Sobic001G125100 Sobic003G373150 Sobic003G373150 Sobic003G293600--Sobic003G373150 Sobic004G321000 Sobic004G321000 Sobic003G293600--Sobic004G321000 Sobic002G203000 Sobic002G203000 Sobic009G258300--Sobic002G203000 Sobic009G258300--Sobic003G293600 Sobic004G283300 Sobic004G283300 Sobic009G258300--Sobic004G283300 Sobic010G076700 Sobic010G076700 Sobic009G258300--Sobic010G076700 Sobic009G258300--Sobic004G278200 Sobic001G063600 Sobic001G063600 Sobic009G258300--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic009G258300--Sobic009G170100 Sobic001G051600 Sobic001G051600 Sobic009G258300--Sobic001G051600 Sobic007G057100 Sobic007G057100 Sobic009G258300--Sobic007G057100 Sobic004G278200--Sobic003G373150 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic001G080300 Sobic001G080300 Sobic004G278200--Sobic001G080300 Sobic004G278200--Sobic002G427400 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic003G032900 Sobic003G032900 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic007G166900--Sobic010G006700 Sobic007G166900--Sobic002G427400 Sobic004G331300 Sobic004G331300 Sobic007G166900--Sobic004G331300 Sobic007G166900--Sobic003G373150 Sobic004G310600 Sobic004G310600 Sobic007G166900--Sobic004G310600 Sobic007G166900--Sobic006G267900 Sobic001G159850 Sobic001G159850 Sobic007G166900--Sobic001G159850 Sobic009G000700 Sobic009G000700 Sobic006G267900--Sobic009G000700 Sobic006G267900--Sobic010G006700 Sobic006G267900--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic006G267900--Sobic003G078501 Sobic006G267900--Sobic001G125100 Sobic004G155150 Sobic004G155150 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic006G267900--Sobic004G331300 Sobic010G006700--Sobic004G331300 Sobic010G006700--Sobic003G078501 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic002G427400--Sobic007G166900 Sobic002G427400--Sobic001G080300 Sobic008G159100 Sobic008G159100 Sobic002G427400--Sobic008G159100 Sobic002G427400--Sobic004G278200 Sobic002G427400--Sobic003G373150 Sobic002G427400--Sobic010G006700 Sobic003G225900 Sobic003G225900 Sobic002G427400--Sobic003G225900 Sobic002G427400--Sobic003G032900 Sobic002G427400--Sobic006G267900 Sobic001G125100--Sobic003G078501 Sobic001G125100--Sobic010G006700 Sobic001G125100--Sobic003G373150 Sobic001G125100--Sobic001G159850 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic003G373150--Sobic004G278200 Sobic004G321000--Sobic006G055600 Sobic009G163900 Sobic009G163900 Sobic004G321000--Sobic009G163900 Sobic004G321000--Sobic004G278200 Sobic004G321000--Sobic003G373150 Sobic006G005600 Sobic006G005600 Sobic004G321000--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic004G321000--Sobic001G092600 Sobic009G201500 Sobic009G201500 Sobic004G321000--Sobic009G201500 Sobic004G321000--Sobic004G283201 Sobic006G184800 Sobic006G184800 Sobic004G321000--Sobic006G184800
Octagon: transcription factors


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