Gene annotation
Transcriptome id Sobic.004G205200.1
Synonym Sb04g025130
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5RNX9
Pfam PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF347
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g38950.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a021281
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G052500 - -
3 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
4 Sobic.007G072901 - -
5 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -
6 Sobic.003G343100 expressed protein -
7 Sobic.009G194600 expressed protein -
8 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
9 Sobic.006G272450 - -
10 Sobic.006G090201 - -
11 Sobic.006G201200 peptide transporter PTR2, putative, expressed -
12 Sobic.007G085350 - -
13 Sobic.003G174850 - -
14 Sobic.009G010800 expressed protein -
15 Sobic.010G058650 - -
16 Sobic.005G022400 GATA zinc finger domain containing protein, expressed -
17 Sobic.002G004400 expressed protein -
18 Sobic.003G178200 tetratricopeptide repeat containing protein, putative, expressed -
19 Sobic.003G245700 3-5 exonuclease domain-containing protein, putative, expressed -
20 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic004G205200 Sobic004G205200 Sobic004G356600 Sobic004G356600 Sobic004G205200--Sobic004G356600 Sobic002G052500 Sobic002G052500 Sobic004G205200--Sobic002G052500 Sobic006G260600 Sobic006G260600 Sobic004G205200--Sobic006G260600 Sobic007G072901 Sobic007G072901 Sobic004G205200--Sobic007G072901 Sobic001G063900 Sobic001G063900 Sobic004G205200--Sobic001G063900 Sobic003G343100 Sobic003G343100 Sobic004G205200--Sobic003G343100 Sobic009G194600 Sobic009G194600 Sobic004G205200--Sobic009G194600 Sobic001G134600 Sobic001G134600 Sobic004G205200--Sobic001G134600 Sobic006G272450 Sobic006G272450 Sobic004G205200--Sobic006G272450 Sobic006G090201 Sobic006G090201 Sobic004G356600--Sobic006G090201 Sobic004G356600--Sobic007G072901 Sobic009G010800 Sobic009G010800 Sobic004G356600--Sobic009G010800 Sobic001G361500 Sobic001G361500 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic006G185400 Sobic006G185400 Sobic004G356600--Sobic006G185400 Sobic003G245700 Sobic003G245700 Sobic004G356600--Sobic003G245700 Sobic002G052500--Sobic007G072901 Sobic002G052500--Sobic003G245700 Sobic002G052500--Sobic003G343100 Sobic008G023500 Sobic008G023500 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic002G052500--Sobic006G185400 Sobic002G052500--Sobic009G010800 Sobic003G178200 Sobic003G178200 Sobic002G052500--Sobic003G178200 Sobic004G330500 Sobic004G330500 Sobic002G052500--Sobic004G330500 Sobic002G034400 Sobic002G034400 Sobic006G260600--Sobic002G034400 Sobic006G260600--Sobic002G052500 Sobic002G356700 Sobic002G356700 Sobic006G260600--Sobic002G356700 Sobic009G233600 Sobic009G233600 Sobic006G260600--Sobic009G233600 Sobic006G260600--Sobic004G356600 Sobic003G051800 Sobic003G051800 Sobic006G260600--Sobic003G051800 Sobic002G004400 Sobic002G004400 Sobic006G260600--Sobic002G004400 Sobic006G260600--Sobic006G090201 Sobic007G085350 Sobic007G085350 Sobic006G260600--Sobic007G085350 Sobic004G351866 Sobic004G351866 Sobic007G072901--Sobic004G351866 Sobic007G072901--Sobic008G023500 Sobic005G189400 Sobic005G189400 Sobic007G072901--Sobic005G189400 Sobic007G072901--Sobic006G090201 Sobic007G072901--Sobic003G245700 Sobic007G072901--Sobic004G330500 Sobic007G072901--Sobic006G185400 Sobic007G152200 Sobic007G152200 Sobic007G072901--Sobic007G152200 Sobic007G072901--Sobic003G357000 Sobic001G063900--Sobic009G010800 Sobic007G210400 Sobic007G210400 Sobic001G063900--Sobic007G210400 Sobic001G063900--Sobic002G052500 Sobic001G063900--Sobic007G072901 Sobic001G063900--Sobic004G356600 Sobic001G063900--Sobic001G361500 Sobic001G063900--Sobic003G245700 Sobic001G063900--Sobic003G178200 Sobic001G063900--Sobic003G343100 Sobic010G275550 Sobic010G275550 Sobic003G343100--Sobic010G275550 Sobic003G343100--Sobic005G189400 Sobic003G343100--Sobic003G245700 Sobic003G343100--Sobic004G330500 Sobic003G343100--Sobic006G185400 Sobic005G037500 Sobic005G037500 Sobic003G343100--Sobic005G037500 Sobic003G343100--Sobic008G023500 Sobic003G343100--Sobic006G090201 Sobic002G037000 Sobic002G037000 Sobic003G343100--Sobic002G037000 Sobic009G194600--Sobic003G343100 Sobic010G058650 Sobic010G058650 Sobic009G194600--Sobic010G058650 Sobic009G194600--Sobic010G275550 Sobic009G194600--Sobic003G245700 Sobic009G194600--Sobic006G185400 Sobic009G194600--Sobic004G330500 Sobic009G194600--Sobic007G152200 Sobic009G194600--Sobic005G189400 Sobic009G194600--Sobic008G023500 Sobic001G378550 Sobic001G378550 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G419900 Sobic001G419900 Sobic001G134600--Sobic001G419900 Sobic001G049000 Sobic001G049000 Sobic001G134600--Sobic001G049000 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic001G134600--Sobic006G090201 Sobic001G134600--Sobic003G343100 Sobic001G134600--Sobic001G063900 Sobic006G272450--Sobic009G164200 Sobic006G272450--Sobic008G023500 Sobic006G272450--Sobic006G090201 Sobic006G272450--Sobic009G010800 Sobic009G070900 Sobic009G070900 Sobic006G272450--Sobic009G070900 Sobic006G272450--Sobic006G185400 Sobic006G272450--Sobic003G245700 Sobic006G272450--Sobic004G330500 Sobic006G272450--Sobic005G189400
Octagon: transcription factors


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