Gene annotation
Transcriptome id Sobic.001G063900.1
Synonym Sb01g005810
Functional annotation RING-H2 finger protein ATL5D, putative, expressed
UniProt C5WY55
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF90
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G06490 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g57410.1 : RING-H2 finger protein ATL5D, putative, expressed
MaizeGDB (Corn) Zm00025a045049 , Zm00025a016617 , Zm00025a008484
Brachypodium KQK12841
Barley HORVU5Hr1G103740.2 , HORVU5Hr1G103740.3 , HORVU5Hr1G103740.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G010800 expressed protein -
2 Sobic.007G210400 lipoxygenase, chloroplast precursor, putative, expressed K00454: lipoxygenase
3 Sobic.002G052500 - -
4 Sobic.007G072901 - -
5 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G361500 expressed protein -
7 Sobic.003G245700 3-5 exonuclease domain-containing protein, putative, expressed -
8 Sobic.003G178200 tetratricopeptide repeat containing protein, putative, expressed -
9 Sobic.003G343100 expressed protein -
10 Sobic.006G090201 - -
11 Sobic.003G423100 NAM, putative, expressed -
12 Sobic.001G378550 - -
13 Sobic.006G239100 VQ domain containing protein, putative, expressed -
14 Sobic.006G185400 - -
15 Sobic.005G189400 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.005G087600 AP2 domain containing protein, expressed -
17 Sobic.004G330500 expressed protein -
18 Sobic.008G078600 NADP-dependent oxidoreductase, putative, expressed -
19 Sobic.005G037500 expressed protein -
20 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family


Gene co-expression network
sample Sobic001G063900 Sobic001G063900 Sobic009G010800 Sobic009G010800 Sobic001G063900--Sobic009G010800 Sobic007G210400 Sobic007G210400 Sobic001G063900--Sobic007G210400 Sobic002G052500 Sobic002G052500 Sobic001G063900--Sobic002G052500 Sobic007G072901 Sobic007G072901 Sobic001G063900--Sobic007G072901 Sobic004G356600 Sobic004G356600 Sobic001G063900--Sobic004G356600 Sobic001G361500 Sobic001G361500 Sobic001G063900--Sobic001G361500 Sobic003G245700 Sobic003G245700 Sobic001G063900--Sobic003G245700 Sobic003G178200 Sobic003G178200 Sobic001G063900--Sobic003G178200 Sobic003G343100 Sobic003G343100 Sobic001G063900--Sobic003G343100 Sobic006G185400 Sobic006G185400 Sobic009G010800--Sobic006G185400 Sobic004G330500 Sobic004G330500 Sobic009G010800--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic009G010800--Sobic005G189400 Sobic009G010800--Sobic001G361500 Sobic002G205201 Sobic002G205201 Sobic009G010800--Sobic002G205201 Sobic006G209100 Sobic006G209100 Sobic009G010800--Sobic006G209100 Sobic007G152200 Sobic007G152200 Sobic009G010800--Sobic007G152200 Sobic008G023500 Sobic008G023500 Sobic009G010800--Sobic008G023500 Sobic009G010800--Sobic003G245700 Sobic007G210400--Sobic007G072901 Sobic007G210400--Sobic007G152200 Sobic007G210400--Sobic005G189400 Sobic007G210400--Sobic004G330500 Sobic007G210400--Sobic009G010800 Sobic010G014600 Sobic010G014600 Sobic007G210400--Sobic010G014600 Sobic006G090201 Sobic006G090201 Sobic007G210400--Sobic006G090201 Sobic007G210400--Sobic003G245700 Sobic007G210400--Sobic006G185400 Sobic002G052500--Sobic007G072901 Sobic002G052500--Sobic003G245700 Sobic002G052500--Sobic003G343100 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic002G052500--Sobic006G185400 Sobic002G052500--Sobic009G010800 Sobic002G052500--Sobic003G178200 Sobic002G052500--Sobic004G330500 Sobic004G351866 Sobic004G351866 Sobic007G072901--Sobic004G351866 Sobic007G072901--Sobic008G023500 Sobic007G072901--Sobic005G189400 Sobic007G072901--Sobic006G090201 Sobic007G072901--Sobic003G245700 Sobic007G072901--Sobic004G330500 Sobic007G072901--Sobic006G185400 Sobic007G072901--Sobic007G152200 Sobic003G357000 Sobic003G357000 Sobic007G072901--Sobic003G357000 Sobic004G356600--Sobic006G090201 Sobic004G356600--Sobic007G072901 Sobic004G356600--Sobic009G010800 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic004G356600--Sobic006G185400 Sobic004G356600--Sobic003G245700 Sobic001G361500--Sobic006G185400 Sobic001G361500--Sobic004G330500 Sobic001G361500--Sobic005G189400 Sobic001G361500--Sobic006G209100 Sobic001G361500--Sobic002G205201 Sobic001G361500--Sobic007G152200 Sobic001G361500--Sobic009G164200 Sobic001G361500--Sobic008G023500 Sobic005G037500 Sobic005G037500 Sobic001G361500--Sobic005G037500 Sobic003G245700--Sobic003G178200 Sobic003G245700--Sobic005G189400 Sobic003G245700--Sobic006G185400 Sobic003G245700--Sobic004G330500 Sobic003G245700--Sobic008G023500 Sobic003G245700--Sobic006G090201 Sobic003G245700--Sobic002G205201 Sobic003G245700--Sobic007G152200 Sobic003G245700--Sobic001G361500 Sobic003G178200--Sobic003G245700 Sobic003G178200--Sobic005G189400 Sobic003G178200--Sobic004G330500 Sobic003G178200--Sobic006G185400 Sobic003G178200--Sobic008G023500 Sobic003G178200--Sobic006G090201 Sobic003G178200--Sobic007G152200 Sobic003G178200--Sobic001G361500 Sobic003G178200--Sobic002G205201 Sobic010G275550 Sobic010G275550 Sobic003G343100--Sobic010G275550 Sobic003G343100--Sobic005G189400 Sobic003G343100--Sobic003G245700 Sobic003G343100--Sobic004G330500 Sobic003G343100--Sobic006G185400 Sobic003G343100--Sobic005G037500 Sobic003G343100--Sobic008G023500 Sobic003G343100--Sobic006G090201 Sobic002G037000 Sobic002G037000 Sobic003G343100--Sobic002G037000
Octagon: transcription factors


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