Gene annotation
Transcriptome id Sobic.001G081700.1
Synonym Sb01g007350
Functional annotation SWIB/MDM2 domain containing protein, expressed
UniProt C5X052
Pfam PF02201
Panther DB PTHR13844 PTHR13844:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G34290 : SWIB/MDM2 domain superfamily protein
RAP-DB (Rice) LOC_Os03g55310.1 : SWIB/MDM2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016752
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G081700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
2 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
3 Sobic.001G374800 auxin response factor 75, putative, expressed K10994: cell cycle checkpoint control protein RAD9A
4 Sobic.001G534300 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AT-GTL1, putative, expressed -
5 Sobic.008G113300 expressed protein -
6 Sobic.007G162400 ABC-2 type transporter domain containing protein, expressed -
7 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
8 Sobic.006G093200 PHD finger protein, putative, expressed -
9 Sobic.002G341700 expressed protein -
10 Sobic.008G026400 expressed protein -
11 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
12 Sobic.009G002900 expressed protein -
13 Sobic.006G160200 MSP domain containing protein, expressed -
14 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
15 Sobic.003G142100 beta-D-xylosidase, putative, expressed -
16 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
17 Sobic.010G185300 AP2 domain containing protein, expressed -
18 Sobic.004G246500 ATMAP70 protein, putative, expressed -
19 Sobic.004G229700 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
20 Sobic.004G234500 eukaryotic aspartyl protease domain containing protein, expressed -


Gene co-expression network
sample Sobic001G081700 Sobic001G081700 Sobic004G343700 Sobic004G343700 Sobic001G081700--Sobic004G343700 Sobic004G190600 Sobic004G190600 Sobic001G081700--Sobic004G190600 Sobic001G374800 Sobic001G374800 Sobic001G081700--Sobic001G374800 Sobic001G534300 Sobic001G534300 Sobic001G081700--Sobic001G534300 Sobic008G113300 Sobic008G113300 Sobic001G081700--Sobic008G113300 Sobic007G162400 Sobic007G162400 Sobic001G081700--Sobic007G162400 Sobic001G105800 Sobic001G105800 Sobic001G081700--Sobic001G105800 Sobic006G093200 Sobic006G093200 Sobic001G081700--Sobic006G093200 Sobic002G341700 Sobic002G341700 Sobic001G081700--Sobic002G341700 Sobic003G373900 Sobic003G373900 Sobic004G343700--Sobic003G373900 Sobic004G246500 Sobic004G246500 Sobic004G343700--Sobic004G246500 Sobic003G019900 Sobic003G019900 Sobic004G343700--Sobic003G019900 Sobic001G271600 Sobic001G271600 Sobic004G343700--Sobic001G271600 Sobic010G185300 Sobic010G185300 Sobic004G343700--Sobic010G185300 Sobic010G269700 Sobic010G269700 Sobic004G343700--Sobic010G269700 Sobic004G234500 Sobic004G234500 Sobic004G343700--Sobic004G234500 Sobic006G274200 Sobic006G274200 Sobic004G343700--Sobic006G274200 Sobic007G147200 Sobic007G147200 Sobic004G343700--Sobic007G147200 Sobic001G235700 Sobic001G235700 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic001G371100 Sobic001G371100 Sobic004G190600--Sobic001G371100 Sobic001G374800--Sobic001G081700 Sobic003G231900 Sobic003G231900 Sobic001G374800--Sobic003G231900 Sobic001G374800--Sobic004G190600 Sobic006G146900 Sobic006G146900 Sobic001G374800--Sobic006G146900 Sobic005G114600 Sobic005G114600 Sobic001G374800--Sobic005G114600 Sobic003G257200 Sobic003G257200 Sobic001G374800--Sobic003G257200 Sobic001G374800--Sobic004G208100 Sobic004G117300 Sobic004G117300 Sobic001G374800--Sobic004G117300 Sobic002G126200 Sobic002G126200 Sobic001G374800--Sobic002G126200 Sobic010G181500 Sobic010G181500 Sobic001G534300--Sobic010G181500 Sobic006G177000 Sobic006G177000 Sobic001G534300--Sobic006G177000 Sobic001G273100 Sobic001G273100 Sobic001G534300--Sobic001G273100 Sobic001G534300--Sobic010G185300 Sobic003G220500 Sobic003G220500 Sobic001G534300--Sobic003G220500 Sobic001G534300--Sobic001G081700 Sobic002G045200 Sobic002G045200 Sobic001G534300--Sobic002G045200 Sobic008G137500 Sobic008G137500 Sobic001G534300--Sobic008G137500 Sobic001G534300--Sobic002G341700 Sobic007G006800 Sobic007G006800 Sobic008G113300--Sobic007G006800 Sobic006G281900 Sobic006G281900 Sobic008G113300--Sobic006G281900 Sobic004G164700 Sobic004G164700 Sobic008G113300--Sobic004G164700 Sobic006G241800 Sobic006G241800 Sobic008G113300--Sobic006G241800 Sobic003G351900 Sobic003G351900 Sobic008G113300--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic008G113300--Sobic001G425700 Sobic005G163400 Sobic005G163400 Sobic008G113300--Sobic005G163400 Sobic003G153900 Sobic003G153900 Sobic008G113300--Sobic003G153900 Sobic009G177200 Sobic009G177200 Sobic008G113300--Sobic009G177200 Sobic006G221300 Sobic006G221300 Sobic007G162400--Sobic006G221300 Sobic009G127800 Sobic009G127800 Sobic007G162400--Sobic009G127800 Sobic001G054700 Sobic001G054700 Sobic007G162400--Sobic001G054700 Sobic004G108400 Sobic004G108400 Sobic007G162400--Sobic004G108400 Sobic001G101700 Sobic001G101700 Sobic007G162400--Sobic001G101700 Sobic002G027600 Sobic002G027600 Sobic007G162400--Sobic002G027600 Sobic007G201900 Sobic007G201900 Sobic007G162400--Sobic007G201900 Sobic003G290400 Sobic003G290400 Sobic007G162400--Sobic003G290400 Sobic009G143200 Sobic009G143200 Sobic007G162400--Sobic009G143200 Sobic007G007800 Sobic007G007800 Sobic001G105800--Sobic007G007800 Sobic002G223900 Sobic002G223900 Sobic001G105800--Sobic002G223900 Sobic009G184200 Sobic009G184200 Sobic001G105800--Sobic009G184200 Sobic003G444300 Sobic003G444300 Sobic001G105800--Sobic003G444300 Sobic003G387700 Sobic003G387700 Sobic001G105800--Sobic003G387700 Sobic001G083300 Sobic001G083300 Sobic001G105800--Sobic001G083300 Sobic001G456500 Sobic001G456500 Sobic001G105800--Sobic001G456500 Sobic010G105400 Sobic010G105400 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic006G093200--Sobic003G019900 Sobic010G092400 Sobic010G092400 Sobic006G093200--Sobic010G092400 Sobic008G070700 Sobic008G070700 Sobic006G093200--Sobic008G070700 Sobic010G024000 Sobic010G024000 Sobic006G093200--Sobic010G024000 Sobic006G093200--Sobic006G274200 Sobic003G032200 Sobic003G032200 Sobic006G093200--Sobic003G032200 Sobic006G093200--Sobic010G269700 Sobic001G074000 Sobic001G074000 Sobic006G093200--Sobic001G074000 Sobic010G222800 Sobic010G222800 Sobic006G093200--Sobic010G222800 Sobic003G283400 Sobic003G283400 Sobic002G341700--Sobic003G283400 Sobic005G156100 Sobic005G156100 Sobic002G341700--Sobic005G156100 Sobic007G018500 Sobic007G018500 Sobic002G341700--Sobic007G018500 Sobic009G099150 Sobic009G099150 Sobic002G341700--Sobic009G099150 Sobic002G341700--Sobic006G177000 Sobic002G341700--Sobic006G093200 Sobic009G129700 Sobic009G129700 Sobic002G341700--Sobic009G129700 Sobic001G522300 Sobic001G522300 Sobic002G341700--Sobic001G522300 Sobic002G341700--Sobic001G074000
Octagon: transcription factors


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