Gene annotation
Transcriptome id Sobic.001G534300.1
Synonym AT-GTL2, Sb01g049740, AT-GTL1, SbTri01;SbTri01, GTL1
Functional annotation Trihelix Family (PubMedID : 24864043)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
AT-GTL1, putative, expressed
UniProt A0A1B6QR32
Pfam PF13837
Panther DB PTHR21654 PTHR21654:SF8
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76890 : Duplicated homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os03g02240.1 : AT-GTL1, putative, expressed
MaizeGDB (Corn) Zm00025a017424 , Zm00025a056623 , Zm00025a010385 , Zm00025a032162 , Zm00025a035087 , Zm00025a006308 , Zm00025a000196 , Zm00025a018641
Brachypodium KQJ83849 , KQJ83848 , KQJ97389 , KQJ97388 , PNT67683 , KQJ83854 , KQJ83850 , KQJ83851 , KQJ83852 , KQJ83853 , KQJ97390 , PNT69145 , KQK24020 , KQJ92790
Barley HORVU6Hr1G061300.11 , HORVU2Hr1G092650.6 , HORVU2Hr1G092650.7 , HORVU2Hr1G092650.4 , HORVU2Hr1G092650.5 , HORVU2Hr1G092650.2 , HORVU2Hr1G092650.3 , HORVU2Hr1G092650.1 , HORVU6Hr1G061300.9 , HORVU6Hr1G061300.6 , HORVU6Hr1G061300.7 , HORVU6Hr1G061300.5 , HORVU6Hr1G061300.2 , HORVU6Hr1G061300.1 , HORVU1Hr1G046940.8 , HORVU1Hr1G046940.9 , HORVU1Hr1G046940.4 , HORVU1Hr1G046940.5 , HORVU1Hr1G046940.6 , HORVU1Hr1G046940.7 , HORVU1Hr1G046940.1 , HORVU1Hr1G046940.2 , HORVU1Hr1G046940.3 , HORVU0Hr1G014900.2 , HORVU0Hr1G014900.3 , HORVU0Hr1G014900.1 , HORVU0Hr1G014900.4 , HORVU4Hr1G089120.2 , HORVU4Hr1G089120.3 , HORVU4Hr1G089120.1 , HORVU4Hr1G089120.6 , HORVU4Hr1G089120.4 , HORVU4Hr1G089120.5
Wheat TraesCS1D02G162400 , TraesCS1D02G162400 , TraesCS6D02G016300 , TraesCS4B02G396900 , TraesCS2A02G389200 , TraesCS2A02G389200 , TraesCS2A02G389200 , TraesCS1A02G176700 , TraesCS1A02G176700 , TraesCS1B02G203300 , TraesCS1B02G203300 , TraesCS6D02G222500 , TraesCS6D02G222500 , TraesCS6D02G222500 , TraesCS6A02G013200 , TraesCS6A02G013200 , TraesCS6B02G284400 , TraesCS6B02G284400 , TraesCS6B02G284400 , TraesCS6B02G020100 , TraesCS2D02G387100 , TraesCS2D02G387100 , TraesCS2D02G387100 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS6A02G240200 , TraesCS6A02G240200 , TraesCS5A02G558200 , TraesCSU02G029700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G181500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.006G177000 cytochrome P450, putative, expressed K15398: fatty acid omega-hydroxylase
3 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.010G185300 AP2 domain containing protein, expressed -
5 Sobic.003G220500 TTL1, putative, expressed -
6 Sobic.001G081700 SWIB/MDM2 domain containing protein, expressed -
7 Sobic.002G045200 protein kinase, putative, expressed -
8 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.002G341700 expressed protein -
10 Sobic.006G219200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATBAG1, putative, expressed -
11 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
12 Sobic.005G104100 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
14 Sobic.003G283400 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
16 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
17 Sobic.002G314800 monocopper oxidase, putative, expressed -
18 Sobic.008G114700 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.009G129700 serine/threonine-protein kinase, putative, expressed -
20 Sobic.002G142500 expressed protein -


Gene co-expression network
sample Sobic001G534300 Sobic001G534300 Sobic010G181500 Sobic010G181500 Sobic001G534300--Sobic010G181500 Sobic006G177000 Sobic006G177000 Sobic001G534300--Sobic006G177000 Sobic001G273100 Sobic001G273100 Sobic001G534300--Sobic001G273100 Sobic010G185300 Sobic010G185300 Sobic001G534300--Sobic010G185300 Sobic003G220500 Sobic003G220500 Sobic001G534300--Sobic003G220500 Sobic001G081700 Sobic001G081700 Sobic001G534300--Sobic001G081700 Sobic002G045200 Sobic002G045200 Sobic001G534300--Sobic002G045200 Sobic008G137500 Sobic008G137500 Sobic001G534300--Sobic008G137500 Sobic002G341700 Sobic002G341700 Sobic001G534300--Sobic002G341700 Sobic003G419700 Sobic003G419700 Sobic010G181500--Sobic003G419700 Sobic010G010900 Sobic010G010900 Sobic010G181500--Sobic010G010900 Sobic001G074000 Sobic001G074000 Sobic010G181500--Sobic001G074000 Sobic001G522300 Sobic001G522300 Sobic010G181500--Sobic001G522300 Sobic001G083500 Sobic001G083500 Sobic010G181500--Sobic001G083500 Sobic010G111200 Sobic010G111200 Sobic010G181500--Sobic010G111200 Sobic003G338200 Sobic003G338200 Sobic010G181500--Sobic003G338200 Sobic005G104100 Sobic005G104100 Sobic010G181500--Sobic005G104100 Sobic003G360700 Sobic003G360700 Sobic010G181500--Sobic003G360700 Sobic006G177000--Sobic002G341700 Sobic006G177000--Sobic001G273100 Sobic005G156100 Sobic005G156100 Sobic006G177000--Sobic005G156100 Sobic006G110700 Sobic006G110700 Sobic006G177000--Sobic006G110700 Sobic003G078400 Sobic003G078400 Sobic006G177000--Sobic003G078400 Sobic006G122300 Sobic006G122300 Sobic006G177000--Sobic006G122300 Sobic006G177000--Sobic001G534300 Sobic007G018500 Sobic007G018500 Sobic006G177000--Sobic007G018500 Sobic006G160200 Sobic006G160200 Sobic006G177000--Sobic006G160200 Sobic001G273100--Sobic006G177000 Sobic004G336700 Sobic004G336700 Sobic001G273100--Sobic004G336700 Sobic010G191100 Sobic010G191100 Sobic001G273100--Sobic010G191100 Sobic001G273100--Sobic001G534300 Sobic006G163600 Sobic006G163600 Sobic001G273100--Sobic006G163600 Sobic002G202500 Sobic002G202500 Sobic001G273100--Sobic002G202500 Sobic002G412400 Sobic002G412400 Sobic001G273100--Sobic002G412400 Sobic002G229800 Sobic002G229800 Sobic001G273100--Sobic002G229800 Sobic003G325400 Sobic003G325400 Sobic001G273100--Sobic003G325400 Sobic004G343700 Sobic004G343700 Sobic010G185300--Sobic004G343700 Sobic003G387300 Sobic003G387300 Sobic010G185300--Sobic003G387300 Sobic002G027600 Sobic002G027600 Sobic010G185300--Sobic002G027600 Sobic002G279400 Sobic002G279400 Sobic010G185300--Sobic002G279400 Sobic007G162400 Sobic007G162400 Sobic010G185300--Sobic007G162400 Sobic004G234500 Sobic004G234500 Sobic010G185300--Sobic004G234500 Sobic003G011200 Sobic003G011200 Sobic010G185300--Sobic003G011200 Sobic005G062600 Sobic005G062600 Sobic010G185300--Sobic005G062600 Sobic007G147200 Sobic007G147200 Sobic010G185300--Sobic007G147200 Sobic009G172950 Sobic009G172950 Sobic003G220500--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G220500--Sobic006G142500 Sobic001G296100 Sobic001G296100 Sobic003G220500--Sobic001G296100 Sobic002G284100 Sobic002G284100 Sobic003G220500--Sobic002G284100 Sobic001G540700 Sobic001G540700 Sobic003G220500--Sobic001G540700 Sobic002G383100 Sobic002G383100 Sobic003G220500--Sobic002G383100 Sobic001G487200 Sobic001G487200 Sobic003G220500--Sobic001G487200 Sobic001G452900 Sobic001G452900 Sobic003G220500--Sobic001G452900 Sobic004G267600 Sobic004G267600 Sobic003G220500--Sobic004G267600 Sobic001G081700--Sobic004G343700 Sobic004G190600 Sobic004G190600 Sobic001G081700--Sobic004G190600 Sobic001G374800 Sobic001G374800 Sobic001G081700--Sobic001G374800 Sobic001G081700--Sobic001G534300 Sobic008G113300 Sobic008G113300 Sobic001G081700--Sobic008G113300 Sobic001G081700--Sobic007G162400 Sobic001G105800 Sobic001G105800 Sobic001G081700--Sobic001G105800 Sobic006G093200 Sobic006G093200 Sobic001G081700--Sobic006G093200 Sobic001G081700--Sobic002G341700 Sobic001G389600 Sobic001G389600 Sobic002G045200--Sobic001G389600 Sobic010G211800 Sobic010G211800 Sobic002G045200--Sobic010G211800 Sobic001G074100 Sobic001G074100 Sobic002G045200--Sobic001G074100 Sobic010G165100 Sobic010G165100 Sobic002G045200--Sobic010G165100 Sobic006G241800 Sobic006G241800 Sobic002G045200--Sobic006G241800 Sobic002G045200--Sobic001G522300 Sobic002G362700 Sobic002G362700 Sobic002G045200--Sobic002G362700 Sobic002G311000 Sobic002G311000 Sobic002G045200--Sobic002G311000 Sobic002G142500 Sobic002G142500 Sobic002G045200--Sobic002G142500 Sobic008G137500--Sobic010G191100 Sobic005G111600 Sobic005G111600 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic008G137500--Sobic006G228100 Sobic009G070000 Sobic009G070000 Sobic008G137500--Sobic009G070000 Sobic004G155900 Sobic004G155900 Sobic008G137500--Sobic004G155900 Sobic010G246500 Sobic010G246500 Sobic008G137500--Sobic010G246500 Sobic002G154300 Sobic002G154300 Sobic008G137500--Sobic002G154300 Sobic003G283400 Sobic003G283400 Sobic002G341700--Sobic003G283400 Sobic002G341700--Sobic005G156100 Sobic002G341700--Sobic007G018500 Sobic009G099150 Sobic009G099150 Sobic002G341700--Sobic009G099150 Sobic002G341700--Sobic006G177000 Sobic002G341700--Sobic006G093200 Sobic009G129700 Sobic009G129700 Sobic002G341700--Sobic009G129700 Sobic002G341700--Sobic001G522300 Sobic002G341700--Sobic001G074000
Octagon: transcription factors


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