Gene annotation
Transcriptome id Sobic.001G273100.2,Sobic.001G273100.1
Synonym Sb01g026750
Functional annotation MATE efflux family protein, putative, expressed
UniProt A0A1B6QLD6
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF174
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G26590 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g11860.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003704
Brachypodium PNT74408 , KQK14108
Barley HORVU3Hr1G014320.8 , HORVU3Hr1G014320.5 , HORVU3Hr1G014320.4 , HORVU3Hr1G014320.7 , HORVU3Hr1G014320.6 , HORVU3Hr1G014320.1 , HORVU3Hr1G014320.3 , HORVU3Hr1G014320.2
Wheat TraesCS3B02G039300 , TraesCS3A02G044500 , TraesCS4D02G068800 , TraesCS3A02G044500 , TraesCS7B02G384300 , TraesCS3D02G036400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G177000 cytochrome P450, putative, expressed K15398: fatty acid omega-hydroxylase
2 Sobic.004G336700 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
4 Sobic.001G534300 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AT-GTL1, putative, expressed -
5 Sobic.006G163600 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.002G202500 spotted leaf 11, putative, expressed -
7 Sobic.002G412400 heavy metal-associated domain containing protein, expressed -
8 Sobic.002G229800 DUF617 domain containing protein, expressed -
9 Sobic.003G325400 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
10 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.002G408500 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
12 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
13 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
14 Sobic.006G108000 formin, putative, expressed -
15 Sobic.009G070500 uncharacterized protein At4g06744 precursor, putative, expressed -
16 Sobic.006G110700 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
18 Sobic.001G474300 expressed protein -
19 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
20 Sobic.005G156100 Long chain acyl CoA synthetase 2 LACS2 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase


Gene co-expression network
sample Sobic001G273100 Sobic001G273100 Sobic006G177000 Sobic006G177000 Sobic001G273100--Sobic006G177000 Sobic004G336700 Sobic004G336700 Sobic001G273100--Sobic004G336700 Sobic010G191100 Sobic010G191100 Sobic001G273100--Sobic010G191100 Sobic001G534300 Sobic001G534300 Sobic001G273100--Sobic001G534300 Sobic006G163600 Sobic006G163600 Sobic001G273100--Sobic006G163600 Sobic002G202500 Sobic002G202500 Sobic001G273100--Sobic002G202500 Sobic002G412400 Sobic002G412400 Sobic001G273100--Sobic002G412400 Sobic002G229800 Sobic002G229800 Sobic001G273100--Sobic002G229800 Sobic003G325400 Sobic003G325400 Sobic001G273100--Sobic003G325400 Sobic002G341700 Sobic002G341700 Sobic006G177000--Sobic002G341700 Sobic006G177000--Sobic001G273100 Sobic005G156100 Sobic005G156100 Sobic006G177000--Sobic005G156100 Sobic006G110700 Sobic006G110700 Sobic006G177000--Sobic006G110700 Sobic003G078400 Sobic003G078400 Sobic006G177000--Sobic003G078400 Sobic006G122300 Sobic006G122300 Sobic006G177000--Sobic006G122300 Sobic006G177000--Sobic001G534300 Sobic007G018500 Sobic007G018500 Sobic006G177000--Sobic007G018500 Sobic006G160200 Sobic006G160200 Sobic006G177000--Sobic006G160200 Sobic004G336700--Sobic002G202500 Sobic001G265300 Sobic001G265300 Sobic004G336700--Sobic001G265300 Sobic010G209800 Sobic010G209800 Sobic004G336700--Sobic010G209800 Sobic004G336700--Sobic001G273100 Sobic004G336700--Sobic002G412400 Sobic004G336700--Sobic002G229800 Sobic006G108000 Sobic006G108000 Sobic004G336700--Sobic006G108000 Sobic003G406500 Sobic003G406500 Sobic004G336700--Sobic003G406500 Sobic004G336700--Sobic006G163600 Sobic008G137500 Sobic008G137500 Sobic010G191100--Sobic008G137500 Sobic004G155900 Sobic004G155900 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic002G154300 Sobic002G154300 Sobic010G191100--Sobic002G154300 Sobic010G191100--Sobic006G163600 Sobic010G246500 Sobic010G246500 Sobic010G191100--Sobic010G246500 Sobic003G301200 Sobic003G301200 Sobic010G191100--Sobic003G301200 Sobic010G191100--Sobic002G229800 Sobic010G191100--Sobic001G273100 Sobic010G181500 Sobic010G181500 Sobic001G534300--Sobic010G181500 Sobic001G534300--Sobic006G177000 Sobic001G534300--Sobic001G273100 Sobic010G185300 Sobic010G185300 Sobic001G534300--Sobic010G185300 Sobic003G220500 Sobic003G220500 Sobic001G534300--Sobic003G220500 Sobic001G081700 Sobic001G081700 Sobic001G534300--Sobic001G081700 Sobic002G045200 Sobic002G045200 Sobic001G534300--Sobic002G045200 Sobic001G534300--Sobic008G137500 Sobic001G534300--Sobic002G341700 Sobic006G163600--Sobic003G301200 Sobic010G189800 Sobic010G189800 Sobic006G163600--Sobic010G189800 Sobic007G081300 Sobic007G081300 Sobic006G163600--Sobic007G081300 Sobic006G163600--Sobic010G191100 Sobic002G221400 Sobic002G221400 Sobic006G163600--Sobic002G221400 Sobic006G278400 Sobic006G278400 Sobic006G163600--Sobic006G278400 Sobic006G163600--Sobic008G137500 Sobic006G163600--Sobic004G155900 Sobic006G247500 Sobic006G247500 Sobic006G163600--Sobic006G247500 Sobic007G162000 Sobic007G162000 Sobic002G202500--Sobic007G162000 Sobic002G202500--Sobic004G336700 Sobic001G247700 Sobic001G247700 Sobic002G202500--Sobic001G247700 Sobic009G195600 Sobic009G195600 Sobic002G202500--Sobic009G195600 Sobic002G202500--Sobic001G265300 Sobic004G113900 Sobic004G113900 Sobic002G202500--Sobic004G113900 Sobic007G019600 Sobic007G019600 Sobic002G202500--Sobic007G019600 Sobic002G202500--Sobic010G209800 Sobic004G283800 Sobic004G283800 Sobic002G202500--Sobic004G283800 Sobic002G412400--Sobic003G325400 Sobic002G412400--Sobic002G202500 Sobic002G412400--Sobic009G070500 Sobic002G412400--Sobic004G336700 Sobic003G047200 Sobic003G047200 Sobic002G412400--Sobic003G047200 Sobic002G412400--Sobic009G195600 Sobic002G412400--Sobic001G273100 Sobic002G412400--Sobic010G246500 Sobic007G000500 Sobic007G000500 Sobic002G412400--Sobic007G000500 Sobic006G278800 Sobic006G278800 Sobic002G229800--Sobic006G278800 Sobic002G229800--Sobic004G155900 Sobic002G229800--Sobic006G108000 Sobic001G474300 Sobic001G474300 Sobic002G229800--Sobic001G474300 Sobic002G229800--Sobic010G191100 Sobic002G229800--Sobic004G336700 Sobic008G145300 Sobic008G145300 Sobic002G229800--Sobic008G145300 Sobic009G254400 Sobic009G254400 Sobic002G229800--Sobic009G254400 Sobic002G229800--Sobic003G301200 Sobic003G325400--Sobic009G070500 Sobic001G470200 Sobic001G470200 Sobic003G325400--Sobic001G470200 Sobic003G325400--Sobic002G412400 Sobic001G199400 Sobic001G199400 Sobic003G325400--Sobic001G199400 Sobic001G083500 Sobic001G083500 Sobic003G325400--Sobic001G083500 Sobic001G074000 Sobic001G074000 Sobic003G325400--Sobic001G074000 Sobic007G165800 Sobic007G165800 Sobic003G325400--Sobic007G165800 Sobic008G008100 Sobic008G008100 Sobic003G325400--Sobic008G008100 Sobic001G493900 Sobic001G493900 Sobic003G325400--Sobic001G493900
Octagon: transcription factors


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