Gene annotation
Transcriptome id Sobic.009G254400.1
Synonym Sb09g030470
Functional annotation polygalacturonase inhibitor 1 precursor, putative, expressed
UniProt C5YWZ1
Pfam PF08263 PF13855
Panther DB PTHR27000 PTHR27000:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17640 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os06g28480.1 : polygalacturonase inhibitor 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a044768
Brachypodium -
Barley HORVU7Hr1G083080.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G254400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G263500 glycosyl hydrolases family 17, putative, expressed -
2 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
3 Sobic.008G163800 expressed protein -
4 Sobic.002G330800 BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
5 Sobic.001G331100 expressed protein -
6 Sobic.010G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.006G108000 formin, putative, expressed -
8 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
9 Sobic.006G079100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.008G031600 expressed protein -
11 Sobic.010G161300 receptor-like kinase, putative, expressed -
12 Sobic.009G136600 peptide transporter PTR2, putative, expressed -
13 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
14 Sobic.003G006500 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.006G163650 - -
16 Sobic.004G297800 transferase family protein, putative, expressed -
17 Sobic.007G153300 ZOS8-07 - C2H2 zinc finger protein, expressed -
18 Sobic.006G247500 terpene synthase, putative, expressed -
19 Sobic.003G359200 DUF740 domain containing protein, expressed -
20 Sobic.005G226900 expressed protein -


Gene co-expression network
sample Sobic009G254400 Sobic009G254400 Sobic001G263500 Sobic001G263500 Sobic009G254400--Sobic001G263500 Sobic003G406500 Sobic003G406500 Sobic009G254400--Sobic003G406500 Sobic008G163800 Sobic008G163800 Sobic009G254400--Sobic008G163800 Sobic002G330800 Sobic002G330800 Sobic009G254400--Sobic002G330800 Sobic001G331100 Sobic001G331100 Sobic009G254400--Sobic001G331100 Sobic010G179000 Sobic010G179000 Sobic009G254400--Sobic010G179000 Sobic006G108000 Sobic006G108000 Sobic009G254400--Sobic006G108000 Sobic006G278400 Sobic006G278400 Sobic009G254400--Sobic006G278400 Sobic006G079100 Sobic006G079100 Sobic009G254400--Sobic006G079100 Sobic001G263500--Sobic009G254400 Sobic001G263500--Sobic008G163800 Sobic001G263500--Sobic010G179000 Sobic001G263500--Sobic006G079100 Sobic010G161300 Sobic010G161300 Sobic001G263500--Sobic010G161300 Sobic001G263500--Sobic003G406500 Sobic008G031600 Sobic008G031600 Sobic001G263500--Sobic008G031600 Sobic001G263500--Sobic006G278400 Sobic001G263500--Sobic001G331100 Sobic003G406500--Sobic009G254400 Sobic007G153300 Sobic007G153300 Sobic003G406500--Sobic007G153300 Sobic003G406500--Sobic006G108000 Sobic003G406500--Sobic008G163800 Sobic003G006500 Sobic003G006500 Sobic003G406500--Sobic003G006500 Sobic003G406500--Sobic001G263500 Sobic003G359200 Sobic003G359200 Sobic003G406500--Sobic003G359200 Sobic003G406500--Sobic001G331100 Sobic010G209800 Sobic010G209800 Sobic003G406500--Sobic010G209800 Sobic008G163800--Sobic008G031600 Sobic001G103400 Sobic001G103400 Sobic008G163800--Sobic001G103400 Sobic010G014900 Sobic010G014900 Sobic008G163800--Sobic010G014900 Sobic001G460700 Sobic001G460700 Sobic008G163800--Sobic001G460700 Sobic007G158400 Sobic007G158400 Sobic008G163800--Sobic007G158400 Sobic004G061600 Sobic004G061600 Sobic008G163800--Sobic004G061600 Sobic003G390300 Sobic003G390300 Sobic008G163800--Sobic003G390300 Sobic004G107400 Sobic004G107400 Sobic008G163800--Sobic004G107400 Sobic010G029200 Sobic010G029200 Sobic008G163800--Sobic010G029200 Sobic002G330800--Sobic009G254400 Sobic002G330800--Sobic001G263500 Sobic002G330800--Sobic001G331100 Sobic002G330800--Sobic003G406500 Sobic007G162000 Sobic007G162000 Sobic002G330800--Sobic007G162000 Sobic002G330800--Sobic008G163800 Sobic002G330800--Sobic003G359200 Sobic001G303000 Sobic001G303000 Sobic002G330800--Sobic001G303000 Sobic001G062700 Sobic001G062700 Sobic002G330800--Sobic001G062700 Sobic004G115600 Sobic004G115600 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic002G279300 Sobic002G279300 Sobic001G331100--Sobic002G279300 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic001G331100--Sobic008G163800 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G331100--Sobic001G263500 Sobic010G179000--Sobic008G031600 Sobic010G179000--Sobic001G460700 Sobic001G148600 Sobic001G148600 Sobic010G179000--Sobic001G148600 Sobic003G201400 Sobic003G201400 Sobic010G179000--Sobic003G201400 Sobic003G081400 Sobic003G081400 Sobic010G179000--Sobic003G081400 Sobic004G128600 Sobic004G128600 Sobic010G179000--Sobic004G128600 Sobic010G045300 Sobic010G045300 Sobic010G179000--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic010G179000--Sobic010G208300 Sobic010G179000--Sobic010G029200 Sobic006G108000--Sobic003G406500 Sobic006G108000--Sobic001G331100 Sobic006G108000--Sobic004G115600 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic002G221400 Sobic002G221400 Sobic006G108000--Sobic002G221400 Sobic006G108000--Sobic009G254400 Sobic006G108000--Sobic003G040100 Sobic006G108000--Sobic007G153300 Sobic004G227000 Sobic004G227000 Sobic006G278400--Sobic004G227000 Sobic001G180300 Sobic001G180300 Sobic006G278400--Sobic001G180300 Sobic003G301200 Sobic003G301200 Sobic006G278400--Sobic003G301200 Sobic008G163600 Sobic008G163600 Sobic006G278400--Sobic008G163600 Sobic007G081300 Sobic007G081300 Sobic006G278400--Sobic007G081300 Sobic006G187600 Sobic006G187600 Sobic006G278400--Sobic006G187600 Sobic010G014200 Sobic010G014200 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic006G278400--Sobic004G128600 Sobic004G297800 Sobic004G297800 Sobic006G079100--Sobic004G297800 Sobic006G079100--Sobic010G014200 Sobic006G079100--Sobic001G263500 Sobic006G079100--Sobic004G128600 Sobic006G079100--Sobic010G161300 Sobic005G226900 Sobic005G226900 Sobic006G079100--Sobic005G226900 Sobic008G131200 Sobic008G131200 Sobic006G079100--Sobic008G131200 Sobic006G247500 Sobic006G247500 Sobic006G079100--Sobic006G247500 Sobic006G079100--Sobic010G179000
Octagon: transcription factors


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