Gene annotation
Transcriptome id Sobic.006G163600.3,Sobic.006G163600.2,Sobic.006G163600.4,Sobic.006G163600.5
Synonym SbTri03;SbTri03, Sb06g023980, AT-GT2, GT2
Functional annotation Trihelix Family (PubMedID : 24864043)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5REB2 , A0A1Z5RF21
Pfam PF13837
Panther DB PTHR21654 PTHR21654:SF13
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76890 : Duplicated homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os04g45750.1,LOC_Os04g45750.2 : expressed protein
MaizeGDB (Corn) Zm00025a017424 , Zm00025a056623 , Zm00025a010385 , Zm00025a020935 , Zm00025a032162 , Zm00025a035087 , Zm00025a006308 , Zm00025a000196 , Zm00025a018641
Brachypodium KQJ83849 , KQK24020 , KQJ97389 , KQJ97388 , PNT67683 , KQJ83854 , KQJ83850 , KQJ83851 , KQJ83852 , KQJ83853 , KQJ97390 , KQJ83848 , PNT69145 , KQJ92790
Barley HORVU6Hr1G061300.10 , HORVU2Hr1G092650.8 , HORVU2Hr1G092650.6 , HORVU2Hr1G092650.7 , HORVU2Hr1G092650.4 , HORVU2Hr1G092650.5 , HORVU2Hr1G092650.2 , HORVU2Hr1G092650.3 , HORVU2Hr1G092650.1 , HORVU6Hr1G061300.8 , HORVU6Hr1G061300.9 , HORVU6Hr1G061300.6 , HORVU6Hr1G061300.7 , HORVU6Hr1G061300.4 , HORVU6Hr1G061300.5 , HORVU6Hr1G061300.2 , HORVU6Hr1G061300.3 , HORVU6Hr1G061300.1 , HORVU1Hr1G046940.8 , HORVU1Hr1G046940.9 , HORVU1Hr1G046940.4 , HORVU1Hr1G046940.5 , HORVU1Hr1G046940.6 , HORVU1Hr1G046940.7 , HORVU1Hr1G046940.1 , HORVU1Hr1G046940.2 , HORVU1Hr1G046940.3 , HORVU0Hr1G014900.2 , HORVU0Hr1G014900.3 , HORVU0Hr1G014900.1 , HORVU0Hr1G014900.4 , HORVU4Hr1G089120.2 , HORVU4Hr1G089120.3 , HORVU4Hr1G089120.1 , HORVU4Hr1G089120.6 , HORVU4Hr1G089120.4
Wheat TraesCS2B02G407400 , TraesCS1D02G162400 , TraesCS1D02G162400 , TraesCS6D02G016300 , TraesCS4B02G396900 , TraesCS2A02G389200 , TraesCS2A02G389200 , TraesCS2A02G389200 , TraesCS1A02G176700 , TraesCS1A02G176700 , TraesCS1B02G203300 , TraesCS1B02G203300 , TraesCS6D02G222500 , TraesCS6D02G222500 , TraesCS6D02G222500 , TraesCS6A02G013200 , TraesCS6A02G013200 , TraesCS6B02G284400 , TraesCS6B02G284400 , TraesCS6B02G284400 , TraesCS6B02G020100 , TraesCS2D02G387100 , TraesCS2D02G387100 , TraesCS2D02G387100 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS6A02G240200 , TraesCS6A02G240200 , TraesCS5A02G558200 , TraesCSU02G029700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G301200 expressed protein -
2 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
3 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
4 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
5 Sobic.002G221400 ZOS9-14 - C2H2 zinc finger protein, expressed -
6 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
7 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
9 Sobic.006G247500 terpene synthase, putative, expressed -
10 Sobic.006G005000 expressed protein -
11 Sobic.003G235800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
12 Sobic.006G187600 DUF623 domain containing protein, expressed -
13 Sobic.010G246500 glycosyl hydrolases family 16, putative, expressed -
14 Sobic.004G297800 transferase family protein, putative, expressed -
15 Sobic.006G147900 expressed protein -
16 Sobic.001G180300 expressed protein -
17 Sobic.006G108000 formin, putative, expressed -
18 Sobic.004G336700 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
20 Sobic.010G136500 expressed protein -


Gene co-expression network
sample Sobic006G163600 Sobic006G163600 Sobic003G301200 Sobic003G301200 Sobic006G163600--Sobic003G301200 Sobic010G189800 Sobic010G189800 Sobic006G163600--Sobic010G189800 Sobic007G081300 Sobic007G081300 Sobic006G163600--Sobic007G081300 Sobic010G191100 Sobic010G191100 Sobic006G163600--Sobic010G191100 Sobic002G221400 Sobic002G221400 Sobic006G163600--Sobic002G221400 Sobic006G278400 Sobic006G278400 Sobic006G163600--Sobic006G278400 Sobic008G137500 Sobic008G137500 Sobic006G163600--Sobic008G137500 Sobic004G155900 Sobic004G155900 Sobic006G163600--Sobic004G155900 Sobic006G247500 Sobic006G247500 Sobic006G163600--Sobic006G247500 Sobic003G301200--Sobic007G081300 Sobic003G301200--Sobic006G278400 Sobic003G235800 Sobic003G235800 Sobic003G301200--Sobic003G235800 Sobic001G180300 Sobic001G180300 Sobic003G301200--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic003G301200--Sobic004G227000 Sobic003G301200--Sobic010G189800 Sobic008G163600 Sobic008G163600 Sobic003G301200--Sobic008G163600 Sobic006G005000 Sobic006G005000 Sobic003G301200--Sobic006G005000 Sobic006G187600 Sobic006G187600 Sobic003G301200--Sobic006G187600 Sobic010G189800--Sobic007G081300 Sobic004G192700 Sobic004G192700 Sobic010G189800--Sobic004G192700 Sobic003G092200 Sobic003G092200 Sobic010G189800--Sobic003G092200 Sobic010G189800--Sobic006G187600 Sobic010G073300 Sobic010G073300 Sobic010G189800--Sobic010G073300 Sobic007G149600 Sobic007G149600 Sobic010G189800--Sobic007G149600 Sobic010G189800--Sobic004G227000 Sobic010G189800--Sobic003G301200 Sobic001G441800 Sobic001G441800 Sobic010G189800--Sobic001G441800 Sobic007G081300--Sobic003G301200 Sobic007G081300--Sobic006G278400 Sobic007G081300--Sobic010G189800 Sobic007G081300--Sobic001G180300 Sobic007G081300--Sobic003G092200 Sobic007G081300--Sobic004G227000 Sobic007G081300--Sobic007G149600 Sobic007G081300--Sobic006G187600 Sobic007G081300--Sobic006G005000 Sobic010G191100--Sobic008G137500 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic002G154300 Sobic002G154300 Sobic010G191100--Sobic002G154300 Sobic010G191100--Sobic006G163600 Sobic010G246500 Sobic010G246500 Sobic010G191100--Sobic010G246500 Sobic010G191100--Sobic003G301200 Sobic002G229800 Sobic002G229800 Sobic010G191100--Sobic002G229800 Sobic001G273100 Sobic001G273100 Sobic010G191100--Sobic001G273100 Sobic006G108000 Sobic006G108000 Sobic002G221400--Sobic006G108000 Sobic004G115600 Sobic004G115600 Sobic002G221400--Sobic004G115600 Sobic004G266800 Sobic004G266800 Sobic002G221400--Sobic004G266800 Sobic002G221400--Sobic006G163600 Sobic006G147900 Sobic006G147900 Sobic002G221400--Sobic006G147900 Sobic002G221400--Sobic006G278400 Sobic003G406500 Sobic003G406500 Sobic002G221400--Sobic003G406500 Sobic002G221400--Sobic003G301200 Sobic001G331100 Sobic001G331100 Sobic002G221400--Sobic001G331100 Sobic006G278400--Sobic004G227000 Sobic006G278400--Sobic001G180300 Sobic006G278400--Sobic003G301200 Sobic006G278400--Sobic008G163600 Sobic006G278400--Sobic007G081300 Sobic006G278400--Sobic006G187600 Sobic010G014200 Sobic010G014200 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic004G128600 Sobic004G128600 Sobic006G278400--Sobic004G128600 Sobic008G137500--Sobic010G191100 Sobic005G111600 Sobic005G111600 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic008G137500--Sobic006G228100 Sobic009G070000 Sobic009G070000 Sobic008G137500--Sobic009G070000 Sobic008G137500--Sobic004G155900 Sobic008G137500--Sobic010G246500 Sobic008G137500--Sobic002G154300 Sobic004G155900--Sobic003G235800 Sobic004G155900--Sobic003G301200 Sobic004G155900--Sobic010G191100 Sobic002G416000 Sobic002G416000 Sobic004G155900--Sobic002G416000 Sobic004G155900--Sobic002G229800 Sobic004G155900--Sobic008G137500 Sobic004G155900--Sobic007G081300 Sobic004G155900--Sobic010G189800 Sobic004G155900--Sobic006G278400 SobicK044200 SobicK044200 Sobic006G247500--SobicK044200 Sobic009G154000 Sobic009G154000 Sobic006G247500--Sobic009G154000 Sobic006G247500--Sobic002G425900 Sobic006G247500--Sobic001G180300 Sobic008G028500 Sobic008G028500 Sobic006G247500--Sobic008G028500 Sobic010G178900 Sobic010G178900 Sobic006G247500--Sobic010G178900 Sobic006G247500--Sobic004G128600 Sobic004G330400 Sobic004G330400 Sobic006G247500--Sobic004G330400 Sobic006G247500--Sobic006G187600
Octagon: transcription factors


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