Gene annotation
Transcriptome id Sobic.003G235800.3,Sobic.003G235800.2,Sobic.003G235800.1
Synonym PIN6, SbPIN2, efflux carriers pin-formed, Sb03g029320
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments" (PubMedID : 20528920)
auxin efflux carrier component, putative, expressed
UniProt C5XF44 , A0A1B6Q4Z5 , A0A1W0VYM6
Pfam PF03547
Panther DB PTHR31752 PTHR31752:SF18
NCBI CDD -
KEGG Orthology K13947; auxin efflux carrier family protein
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G70940 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os01g45550.2,LOC_Os01g45550.1 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) Zm00025a026277 , Zm00025a033214 , Zm00025a022017 , Zm00025a049923 , Zm00025a028269 , Zm00025a033405 , Zm00025a049447 , Zm00025a051668
Brachypodium KQK18833 , KQJ89538 , KQK08941 , KQK01960 , KQK16936
Barley HORVU7Hr1G038700.9 , HORVU7Hr1G038700.8 , HORVU1Hr1G072970.1 , HORVU1Hr1G072970.6 , HORVU1Hr1G072970.7 , HORVU1Hr1G072970.4 , HORVU1Hr1G072970.5 , HORVU7Hr1G038700.1 , HORVU7Hr1G038700.3 , HORVU7Hr1G038700.2 , HORVU7Hr1G038700.5 , HORVU6Hr1G076110.13 , HORVU6Hr1G076110.12 , HORVU3Hr1G111420.1 , HORVU7Hr1G110470.10 , HORVU7Hr1G110470.11 , HORVU3Hr1G094000.1 , HORVU3Hr1G094000.3 , HORVU3Hr1G094000.5 , HORVU3Hr1G094000.6 , HORVU3Hr1G094000.7 , HORVU3Hr1G057630.27 , HORVU1Hr1G072970.2 , HORVU1Hr1G072970.3 , HORVU7Hr1G038700.20 , HORVU7Hr1G038700.21 , HORVU7Hr1G038700.23 , HORVU7Hr1G038700.24 , HORVU1Hr1G072970.10 , HORVU6Hr1G076110.7 , HORVU1Hr1G072970.8 , HORVU1Hr1G072970.9 , HORVU7Hr1G038700.19 , HORVU7Hr1G038700.18 , HORVU7Hr1G038700.15 , HORVU7Hr1G038700.14 , HORVU7Hr1G038700.17 , HORVU7Hr1G038700.16 , HORVU7Hr1G038700.13 , HORVU7Hr1G038700.12 , HORVU6Hr1G076110.9 , HORVU3Hr1G057630.14 , HORVU3Hr1G057630.15 , HORVU3Hr1G057630.16 , HORVU3Hr1G057630.17 , HORVU3Hr1G057630.10 , HORVU3Hr1G057630.11 , HORVU3Hr1G057630.12 , HORVU3Hr1G057630.13 , HORVU3Hr1G057630.18 , HORVU3Hr1G057630.19 , HORVU7Hr1G110470.8 , HORVU7Hr1G110470.9 , HORVU7Hr1G110470.1 , HORVU7Hr1G110470.6 , HORVU7Hr1G110470.7 , HORVU7Hr1G110470.4 , HORVU7Hr1G110470.5 , HORVU3Hr1G057630.29 , HORVU3Hr1G057630.28 , HORVU6Hr1G076110.11 , HORVU6Hr1G076110.10 , HORVU6Hr1G076110.17 , HORVU6Hr1G076110.16 , HORVU6Hr1G076110.15 , HORVU6Hr1G076110.14 , HORVU3Hr1G057630.21 , HORVU3Hr1G057630.20 , HORVU3Hr1G057630.23 , HORVU3Hr1G057630.22 , HORVU3Hr1G057630.25 , HORVU3Hr1G057630.24 , HORVU1Hr1G091030.7 , HORVU3Hr1G057630.26 , HORVU3Hr1G057630.30 , HORVU3Hr1G078620.2 , HORVU3Hr1G078620.1 , HORVU6Hr1G076110.2 , HORVU6Hr1G076110.1 , HORVU1Hr1G091030.8 , HORVU6Hr1G076110.6 , HORVU6Hr1G076110.5 , HORVU1Hr1G091030.4 , HORVU1Hr1G091030.5 , HORVU1Hr1G091030.6 , HORVU6Hr1G076110.8 , HORVU1Hr1G091030.1 , HORVU1Hr1G091030.2 , HORVU1Hr1G091030.3 , HORVU3Hr1G057630.8 , HORVU3Hr1G057630.9 , HORVU3Hr1G057630.6 , HORVU3Hr1G057630.7 , HORVU3Hr1G057630.4 , HORVU3Hr1G057630.5 , HORVU3Hr1G057630.2 , HORVU3Hr1G057630.3 , HORVU3Hr1G057630.1
Wheat TraesCS3A02G426700 , TraesCS4D02G125300 , TraesCS3D02G221900 , TraesCS4B02G130100 , TraesCS6A02G308600 , TraesCS3D02G324800 , TraesCS3B02G462900 , TraesCS1D02G422900 , TraesCS3A02G231500 , TraesCS6B02G337300 , TraesCS3D02G421600 , TraesCS1A02G415400 , TraesCS3A02G331300 , TraesCS1B02G445400 , TraesCS7B02G095500 , TraesCS3B02G361500 , TraesCS6B02G337300 , TraesCS7A02G492400 , TraesCS7A02G190600 , TraesCS6B02G337300 , TraesCS6B02G337300 , TraesCS6D02G287800 , TraesCS7B02G398100 , TraesCS7D02G191600 , TraesCS3B02G260700 , TraesCS3B02G260700 , TraesCS7D02G478800 , TraesCS7D02G478800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G301200 expressed protein -
2 Sobic.006G259201 - -
3 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
4 Sobic.006G005000 expressed protein -
5 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
6 Sobic.002G416000 pectinesterase, putative, expressed K01051: pectinesterase
7 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
8 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
9 Sobic.004G055800 splicing factor, arginine/serine-rich 12, putative, expressed -
10 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
11 Sobic.001G527500 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.007G224600 - -
13 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
14 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
16 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
17 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
18 Sobic.004G275500 helix-loop-helix DNA-binding protein, putative, expressed -
19 Sobic.004G357033 - -
20 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic003G235800 Sobic003G235800 Sobic003G301200 Sobic003G301200 Sobic003G235800--Sobic003G301200 Sobic006G259201 Sobic006G259201 Sobic003G235800--Sobic006G259201 Sobic006G227800 Sobic006G227800 Sobic003G235800--Sobic006G227800 Sobic006G005000 Sobic006G005000 Sobic003G235800--Sobic006G005000 Sobic007G081300 Sobic007G081300 Sobic003G235800--Sobic007G081300 Sobic002G416000 Sobic002G416000 Sobic003G235800--Sobic002G416000 Sobic004G155900 Sobic004G155900 Sobic003G235800--Sobic004G155900 Sobic007G221800 Sobic007G221800 Sobic003G235800--Sobic007G221800 Sobic004G055800 Sobic004G055800 Sobic003G235800--Sobic004G055800 Sobic003G301200--Sobic007G081300 Sobic006G278400 Sobic006G278400 Sobic003G301200--Sobic006G278400 Sobic003G301200--Sobic003G235800 Sobic001G180300 Sobic001G180300 Sobic003G301200--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic003G301200--Sobic004G227000 Sobic010G189800 Sobic010G189800 Sobic003G301200--Sobic010G189800 Sobic008G163600 Sobic008G163600 Sobic003G301200--Sobic008G163600 Sobic003G301200--Sobic006G005000 Sobic006G187600 Sobic006G187600 Sobic003G301200--Sobic006G187600 Sobic001G220200 Sobic001G220200 Sobic006G259201--Sobic001G220200 Sobic007G224600 Sobic007G224600 Sobic006G259201--Sobic007G224600 Sobic010G158766 Sobic010G158766 Sobic006G259201--Sobic010G158766 Sobic001G410800 Sobic001G410800 Sobic006G259201--Sobic001G410800 Sobic006G259201--Sobic007G221800 Sobic002G320900 Sobic002G320900 Sobic006G259201--Sobic002G320900 Sobic001G519300 Sobic001G519300 Sobic006G259201--Sobic001G519300 Sobic003G065001 Sobic003G065001 Sobic006G259201--Sobic003G065001 Sobic002G210200 Sobic002G210200 Sobic006G259201--Sobic002G210200 Sobic002G140100 Sobic002G140100 Sobic006G227800--Sobic002G140100 Sobic001G139600 Sobic001G139600 Sobic006G227800--Sobic001G139600 Sobic002G326050 Sobic002G326050 Sobic006G227800--Sobic002G326050 Sobic006G227800--Sobic001G519300 Sobic002G218200 Sobic002G218200 Sobic006G227800--Sobic002G218200 Sobic005G232200 Sobic005G232200 Sobic006G227800--Sobic005G232200 Sobic006G227800--Sobic001G410800 Sobic006G227800--Sobic001G220200 Sobic010G158100 Sobic010G158100 Sobic006G227800--Sobic010G158100 Sobic006G005000--Sobic007G224600 Sobic006G005000--Sobic001G220200 Sobic006G005000--Sobic007G221800 Sobic004G357033 Sobic004G357033 Sobic006G005000--Sobic004G357033 Sobic001G130900 Sobic001G130900 Sobic006G005000--Sobic001G130900 Sobic006G005000--Sobic006G259201 Sobic010G074980 Sobic010G074980 Sobic006G005000--Sobic010G074980 Sobic009G225300 Sobic009G225300 Sobic006G005000--Sobic009G225300 Sobic004G192700 Sobic004G192700 Sobic006G005000--Sobic004G192700 Sobic007G081300--Sobic003G301200 Sobic007G081300--Sobic006G278400 Sobic007G081300--Sobic010G189800 Sobic007G081300--Sobic001G180300 Sobic003G092200 Sobic003G092200 Sobic007G081300--Sobic003G092200 Sobic007G081300--Sobic004G227000 Sobic007G149600 Sobic007G149600 Sobic007G081300--Sobic007G149600 Sobic007G081300--Sobic006G187600 Sobic007G081300--Sobic006G005000 Sobic002G416000--Sobic006G187600 Sobic002G416000--Sobic001G180300 Sobic002G416000--Sobic004G227000 Sobic002G416000--Sobic003G092200 Sobic002G416000--Sobic003G235800 Sobic002G416000--Sobic010G189800 Sobic002G416000--Sobic006G278400 Sobic002G416000--Sobic007G081300 Sobic002G416000--Sobic003G301200 Sobic004G155900--Sobic003G235800 Sobic004G155900--Sobic003G301200 Sobic010G191100 Sobic010G191100 Sobic004G155900--Sobic010G191100 Sobic004G155900--Sobic002G416000 Sobic002G229800 Sobic002G229800 Sobic004G155900--Sobic002G229800 Sobic008G137500 Sobic008G137500 Sobic004G155900--Sobic008G137500 Sobic004G155900--Sobic007G081300 Sobic004G155900--Sobic010G189800 Sobic004G155900--Sobic006G278400 Sobic007G221800--Sobic007G149600 Sobic003G200501 Sobic003G200501 Sobic007G221800--Sobic003G200501 Sobic007G221800--Sobic002G210200 Sobic004G265400 Sobic004G265400 Sobic007G221800--Sobic004G265400 Sobic003G067500 Sobic003G067500 Sobic007G221800--Sobic003G067500 Sobic002G284901 Sobic002G284901 Sobic007G221800--Sobic002G284901 Sobic007G221800--Sobic002G320900 Sobic003G067300 Sobic003G067300 Sobic007G221800--Sobic003G067300 Sobic007G093400 Sobic007G093400 Sobic007G221800--Sobic007G093400 Sobic004G055800--Sobic002G140100 Sobic004G055800--Sobic001G220200 Sobic001G197500 Sobic001G197500 Sobic004G055800--Sobic001G197500 Sobic004G055800--Sobic006G005000 Sobic004G055800--Sobic006G227800 Sobic004G055800--Sobic006G259201 Sobic004G055800--Sobic007G224600 Sobic004G055800--Sobic001G519300 Sobic010G096801 Sobic010G096801 Sobic004G055800--Sobic010G096801
Octagon: transcription factors


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