Gene annotation
Transcriptome id Sobic.004G055800.1,Sobic.004G055800.2
Synonym Sb04g004730
Functional annotation splicing factor, arginine/serine-rich 12, putative, expressed
UniProt C5XW41 , A0A194YMZ6
Pfam -
Panther DB PTHR34117 PTHR34117:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79200 : -
RAP-DB (Rice) LOC_Os02g07420.1 : splicing factor, arginine/serine-rich 12, putative, expressed
MaizeGDB (Corn) Zm00025a019079
Brachypodium PNT65981
Barley HORVU0Hr1G018370.5 , HORVU0Hr1G018370.4 , HORVU0Hr1G018370.1
Wheat TraesCS6D02G147600 , TraesCS6D02G147600 , TraesCS6A02G163400 , TraesCS6A02G163400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140100 expressed protein -
2 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
3 Sobic.001G197500 - -
4 Sobic.006G005000 expressed protein -
5 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
6 Sobic.006G259201 - -
7 Sobic.007G224600 - -
8 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
9 Sobic.010G096801 - -
10 Sobic.010G158766 - -
11 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
12 Sobic.002G326050 - -
13 Sobic.001G139600 - -
14 Sobic.001G527500 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
16 Sobic.001G261553 - -
17 Sobic.001G051500 - K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
18 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.004G357033 - -
20 Sobic.004G344301 - -


Gene co-expression network
sample Sobic004G055800 Sobic004G055800 Sobic002G140100 Sobic002G140100 Sobic004G055800--Sobic002G140100 Sobic001G220200 Sobic001G220200 Sobic004G055800--Sobic001G220200 Sobic001G197500 Sobic001G197500 Sobic004G055800--Sobic001G197500 Sobic006G005000 Sobic006G005000 Sobic004G055800--Sobic006G005000 Sobic006G227800 Sobic006G227800 Sobic004G055800--Sobic006G227800 Sobic006G259201 Sobic006G259201 Sobic004G055800--Sobic006G259201 Sobic007G224600 Sobic007G224600 Sobic004G055800--Sobic007G224600 Sobic001G519300 Sobic001G519300 Sobic004G055800--Sobic001G519300 Sobic010G096801 Sobic010G096801 Sobic004G055800--Sobic010G096801 Sobic001G139600 Sobic001G139600 Sobic002G140100--Sobic001G139600 Sobic002G326050 Sobic002G326050 Sobic002G140100--Sobic002G326050 Sobic005G232200 Sobic005G232200 Sobic002G140100--Sobic005G232200 Sobic002G140100--Sobic006G227800 Sobic010G206700 Sobic010G206700 Sobic002G140100--Sobic010G206700 Sobic010G158100 Sobic010G158100 Sobic002G140100--Sobic010G158100 Sobic002G218200 Sobic002G218200 Sobic002G140100--Sobic002G218200 Sobic001G410800 Sobic001G410800 Sobic002G140100--Sobic001G410800 Sobic001G261553 Sobic001G261553 Sobic002G140100--Sobic001G261553 Sobic010G158766 Sobic010G158766 Sobic001G220200--Sobic010G158766 Sobic001G220200--Sobic001G410800 Sobic004G357033 Sobic004G357033 Sobic001G220200--Sobic004G357033 Sobic004G344301 Sobic004G344301 Sobic001G220200--Sobic004G344301 Sobic001G220200--Sobic010G096801 Sobic001G220200--Sobic007G224600 Sobic001G220200--Sobic001G519300 Sobic009G225300 Sobic009G225300 Sobic001G220200--Sobic009G225300 Sobic004G357066 Sobic004G357066 Sobic001G220200--Sobic004G357066 Sobic004G199000 Sobic004G199000 Sobic001G197500--Sobic004G199000 Sobic001G197500--Sobic001G139600 Sobic001G197500--Sobic010G096801 Sobic001G197500--Sobic001G220200 Sobic009G004000 Sobic009G004000 Sobic001G197500--Sobic009G004000 Sobic001G197500--Sobic002G140100 Sobic001G197500--Sobic001G261553 Sobic001G197500--Sobic010G206700 Sobic001G197500--Sobic005G232200 Sobic006G005000--Sobic007G224600 Sobic006G005000--Sobic001G220200 Sobic007G221800 Sobic007G221800 Sobic006G005000--Sobic007G221800 Sobic006G005000--Sobic004G357033 Sobic001G130900 Sobic001G130900 Sobic006G005000--Sobic001G130900 Sobic006G005000--Sobic006G259201 Sobic010G074980 Sobic010G074980 Sobic006G005000--Sobic010G074980 Sobic006G005000--Sobic009G225300 Sobic004G192700 Sobic004G192700 Sobic006G005000--Sobic004G192700 Sobic006G227800--Sobic002G140100 Sobic006G227800--Sobic001G139600 Sobic006G227800--Sobic002G326050 Sobic006G227800--Sobic001G519300 Sobic006G227800--Sobic002G218200 Sobic006G227800--Sobic005G232200 Sobic006G227800--Sobic001G410800 Sobic006G227800--Sobic001G220200 Sobic006G227800--Sobic010G158100 Sobic006G259201--Sobic001G220200 Sobic006G259201--Sobic007G224600 Sobic006G259201--Sobic010G158766 Sobic006G259201--Sobic001G410800 Sobic006G259201--Sobic007G221800 Sobic002G320900 Sobic002G320900 Sobic006G259201--Sobic002G320900 Sobic006G259201--Sobic001G519300 Sobic003G065001 Sobic003G065001 Sobic006G259201--Sobic003G065001 Sobic002G210200 Sobic002G210200 Sobic006G259201--Sobic002G210200 Sobic007G224600--Sobic001G519300 Sobic007G224600--Sobic002G320900 Sobic002G284901 Sobic002G284901 Sobic007G224600--Sobic002G284901 Sobic007G224600--Sobic007G221800 Sobic007G224600--Sobic002G210200 Sobic007G224600--Sobic001G130900 Sobic003G200501 Sobic003G200501 Sobic007G224600--Sobic003G200501 Sobic007G093400 Sobic007G093400 Sobic007G224600--Sobic007G093400 Sobic006G065700 Sobic006G065700 Sobic007G224600--Sobic006G065700 Sobic001G519300--Sobic007G224600 Sobic001G519300--Sobic002G320900 Sobic001G519300--Sobic002G284901 Sobic001G223400 Sobic001G223400 Sobic001G519300--Sobic001G223400 Sobic001G519300--Sobic006G065700 Sobic001G519300--Sobic007G221800 Sobic001G519300--Sobic002G210200 Sobic001G519300--Sobic003G200501 Sobic003G120400 Sobic003G120400 Sobic001G519300--Sobic003G120400 Sobic010G096801--Sobic004G357066 Sobic010G096801--Sobic001G220200 Sobic001G206800 Sobic001G206800 Sobic010G096801--Sobic001G206800 Sobic010G096801--Sobic001G410800 Sobic010G096801--Sobic001G261553 Sobic010G096801--Sobic004G357033 Sobic010G096801--Sobic010G158766 Sobic010G096801--Sobic001G139600 Sobic010G096801--Sobic002G218200
Octagon: transcription factors


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