Gene annotation
Transcriptome id Sobic.001G410800.1
Synonym BIN5, RHL2, Sb01g038780
Functional annotation OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed
UniProt C5WNM1
Pfam PF04406
Panther DB PTHR10848 PTHR10848:SF0
NCBI CDD KOG2795; Catalytic subunit of the meiotic double strand break transesterase
KEGG Orthology K10878; meiotic recombination protein SPO11
Gene Ontology GO:0006259; DNA metabolic process GO:0005694chromosome GO:0005524ATP binding GO:0003824catalytic activity GO:0003677DNA binding GO:0000737DNA catabolic process, endonucleolytic


Orthologs (automatic annotation)
TAIR AT5G02820 : Spo11/DNA topoisomerase VI, subunit A protein
RAP-DB (Rice) LOC_Os03g17610.1 : OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed
MaizeGDB (Corn) Zm00025a001934
Brachypodium KQK22209
Barley HORVU4Hr1G057310.3 , HORVU4Hr1G057310.1 , HORVU4Hr1G057310.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
2 Sobic.004G357033 - -
3 Sobic.002G218200 protein kinase domain containing protein, expressed -
4 Sobic.010G096801 - -
5 Sobic.001G535601 - -
6 Sobic.001G139600 - -
7 Sobic.010G158766 - -
8 Sobic.010G136601 - -
9 Sobic.001G223400 glucosyltransferase, putative, expressed -
10 Sobic.004G357066 - -
11 Sobic.010G158100 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.002G140100 expressed protein -
13 Sobic.007G224600 - -
14 Sobic.005G232200 expressed protein -
15 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
16 Sobic.002G326050 - -
17 Sobic.004G344301 - -
18 Sobic.004G225450 - -
19 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
20 Sobic.006G259201 - -


Gene co-expression network
sample Sobic001G410800 Sobic001G410800 Sobic001G220200 Sobic001G220200 Sobic001G410800--Sobic001G220200 Sobic004G357033 Sobic004G357033 Sobic001G410800--Sobic004G357033 Sobic002G218200 Sobic002G218200 Sobic001G410800--Sobic002G218200 Sobic010G096801 Sobic010G096801 Sobic001G410800--Sobic010G096801 Sobic001G535601 Sobic001G535601 Sobic001G410800--Sobic001G535601 Sobic001G139600 Sobic001G139600 Sobic001G410800--Sobic001G139600 Sobic010G158766 Sobic010G158766 Sobic001G410800--Sobic010G158766 Sobic010G136601 Sobic010G136601 Sobic001G410800--Sobic010G136601 Sobic001G223400 Sobic001G223400 Sobic001G410800--Sobic001G223400 Sobic001G220200--Sobic010G158766 Sobic001G220200--Sobic001G410800 Sobic001G220200--Sobic004G357033 Sobic004G344301 Sobic004G344301 Sobic001G220200--Sobic004G344301 Sobic001G220200--Sobic010G096801 Sobic007G224600 Sobic007G224600 Sobic001G220200--Sobic007G224600 Sobic001G519300 Sobic001G519300 Sobic001G220200--Sobic001G519300 Sobic009G225300 Sobic009G225300 Sobic001G220200--Sobic009G225300 Sobic004G357066 Sobic004G357066 Sobic001G220200--Sobic004G357066 Sobic004G357033--Sobic004G344301 Sobic004G357033--Sobic001G220200 Sobic004G225450 Sobic004G225450 Sobic004G357033--Sobic004G225450 Sobic004G357033--Sobic004G357066 Sobic004G357033--Sobic001G410800 Sobic004G357033--Sobic010G136601 Sobic004G357033--Sobic001G223400 Sobic004G357033--Sobic010G158766 Sobic002G285800 Sobic002G285800 Sobic004G357033--Sobic002G285800 Sobic002G218200--Sobic001G139600 Sobic002G218200--Sobic001G410800 Sobic002G218200--Sobic001G535601 Sobic002G140100 Sobic002G140100 Sobic002G218200--Sobic002G140100 Sobic005G232200 Sobic005G232200 Sobic002G218200--Sobic005G232200 Sobic010G158100 Sobic010G158100 Sobic002G218200--Sobic010G158100 Sobic002G218200--Sobic010G096801 Sobic002G218200--Sobic004G357033 Sobic006G227800 Sobic006G227800 Sobic002G218200--Sobic006G227800 Sobic010G096801--Sobic004G357066 Sobic010G096801--Sobic001G220200 Sobic001G206800 Sobic001G206800 Sobic010G096801--Sobic001G206800 Sobic010G096801--Sobic001G410800 Sobic001G261553 Sobic001G261553 Sobic010G096801--Sobic001G261553 Sobic010G096801--Sobic004G357033 Sobic010G096801--Sobic010G158766 Sobic010G096801--Sobic001G139600 Sobic010G096801--Sobic002G218200 Sobic001G535601--Sobic001G410800 Sobic001G535601--Sobic002G218200 Sobic001G535601--Sobic001G139600 Sobic003G224000 Sobic003G224000 Sobic001G535601--Sobic003G224000 Sobic001G535601--Sobic010G158100 Sobic001G535601--Sobic001G220200 Sobic001G535601--Sobic010G136601 Sobic001G535601--Sobic001G223400 Sobic001G535601--Sobic002G140100 Sobic001G139600--Sobic005G232200 Sobic001G139600--Sobic002G140100 Sobic001G139600--Sobic002G218200 Sobic010G206700 Sobic010G206700 Sobic001G139600--Sobic010G206700 Sobic001G139600--Sobic010G158100 Sobic001G139600--Sobic001G410800 Sobic002G326050 Sobic002G326050 Sobic001G139600--Sobic002G326050 Sobic001G139600--Sobic001G261553 Sobic001G139600--Sobic006G227800 Sobic010G158766--Sobic001G220200 Sobic010G158766--Sobic004G357033 Sobic010G158766--Sobic001G410800 Sobic010G158766--Sobic010G096801 Sobic010G158766--Sobic004G344301 Sobic010G158766--Sobic009G225300 Sobic006G259201 Sobic006G259201 Sobic010G158766--Sobic006G259201 Sobic010G158766--Sobic010G158100 Sobic010G158766--Sobic007G224600 Sobic010G136601--Sobic001G223400 Sobic010G136601--Sobic002G285800 Sobic001G460800 Sobic001G460800 Sobic010G136601--Sobic001G460800 Sobic003G427500 Sobic003G427500 Sobic010G136601--Sobic003G427500 Sobic010G136601--Sobic004G357033 Sobic002G320900 Sobic002G320900 Sobic010G136601--Sobic002G320900 Sobic003G167825 Sobic003G167825 Sobic010G136601--Sobic003G167825 Sobic006G065700 Sobic006G065700 Sobic010G136601--Sobic006G065700 Sobic007G093400 Sobic007G093400 Sobic010G136601--Sobic007G093400 Sobic001G223400--Sobic010G136601 Sobic001G223400--Sobic001G519300 Sobic001G223400--Sobic006G065700 Sobic001G223400--Sobic002G320900 Sobic001G223400--Sobic001G460800 Sobic001G223400--Sobic002G285800 Sobic001G223400--Sobic004G357033 Sobic001G223400--Sobic003G427500 Sobic002G284901 Sobic002G284901 Sobic001G223400--Sobic002G284901
Octagon: transcription factors


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