Gene annotation
Transcriptome id Sobic.010G158100.3
Synonym Sb10g021050, ATL4H
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z411
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF111
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G17905 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34450.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050948
Brachypodium KQK18127 , KQK18126 , KQK18125 , PNT75844 , PNT75846 , PNT75845 , KQK06442 , KQK06441 , PNT71341 , PNT71340
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G139600 - -
2 Sobic.002G326050 - -
3 Sobic.002G140100 expressed protein -
4 Sobic.002G218200 protein kinase domain containing protein, expressed -
5 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
6 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
7 Sobic.005G232200 expressed protein -
8 Sobic.010G158766 - -
9 Sobic.001G535601 - -
10 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
11 Sobic.010G096801 - -
12 Sobic.004G357033 - -
13 Sobic.001G261553 - -
14 Sobic.004G357066 - -
15 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
16 Sobic.004G344301 - -
17 Sobic.001G223400 glucosyltransferase, putative, expressed -
18 Sobic.010G206700 expressed protein -
19 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
20 Sobic.007G224600 - -


Gene co-expression network
sample Sobic010G158100 Sobic010G158100 Sobic001G139600 Sobic001G139600 Sobic010G158100--Sobic001G139600 Sobic002G326050 Sobic002G326050 Sobic010G158100--Sobic002G326050 Sobic002G140100 Sobic002G140100 Sobic010G158100--Sobic002G140100 Sobic002G218200 Sobic002G218200 Sobic010G158100--Sobic002G218200 Sobic001G410800 Sobic001G410800 Sobic010G158100--Sobic001G410800 Sobic001G220200 Sobic001G220200 Sobic010G158100--Sobic001G220200 Sobic005G232200 Sobic005G232200 Sobic010G158100--Sobic005G232200 Sobic010G158766 Sobic010G158766 Sobic010G158100--Sobic010G158766 Sobic001G535601 Sobic001G535601 Sobic010G158100--Sobic001G535601 Sobic001G139600--Sobic005G232200 Sobic001G139600--Sobic002G140100 Sobic001G139600--Sobic002G218200 Sobic010G206700 Sobic010G206700 Sobic001G139600--Sobic010G206700 Sobic001G139600--Sobic010G158100 Sobic001G139600--Sobic001G410800 Sobic001G139600--Sobic002G326050 Sobic001G261553 Sobic001G261553 Sobic001G139600--Sobic001G261553 Sobic006G227800 Sobic006G227800 Sobic001G139600--Sobic006G227800 Sobic002G326050--Sobic002G140100 Sobic002G326050--Sobic010G158100 Sobic002G326050--Sobic001G139600 Sobic002G326050--Sobic006G227800 Sobic001G158000 Sobic001G158000 Sobic002G326050--Sobic001G158000 Sobic002G326050--Sobic001G220200 Sobic001G519300 Sobic001G519300 Sobic002G326050--Sobic001G519300 Sobic002G326050--Sobic002G218200 Sobic004G357033 Sobic004G357033 Sobic002G326050--Sobic004G357033 Sobic002G140100--Sobic001G139600 Sobic002G140100--Sobic002G326050 Sobic002G140100--Sobic005G232200 Sobic002G140100--Sobic006G227800 Sobic002G140100--Sobic010G206700 Sobic002G140100--Sobic010G158100 Sobic002G140100--Sobic002G218200 Sobic002G140100--Sobic001G410800 Sobic002G140100--Sobic001G261553 Sobic002G218200--Sobic001G139600 Sobic002G218200--Sobic001G410800 Sobic002G218200--Sobic001G535601 Sobic002G218200--Sobic002G140100 Sobic002G218200--Sobic005G232200 Sobic002G218200--Sobic010G158100 Sobic010G096801 Sobic010G096801 Sobic002G218200--Sobic010G096801 Sobic002G218200--Sobic004G357033 Sobic002G218200--Sobic006G227800 Sobic001G410800--Sobic001G220200 Sobic001G410800--Sobic004G357033 Sobic001G410800--Sobic002G218200 Sobic001G410800--Sobic010G096801 Sobic001G410800--Sobic001G535601 Sobic001G410800--Sobic001G139600 Sobic001G410800--Sobic010G158766 Sobic010G136601 Sobic010G136601 Sobic001G410800--Sobic010G136601 Sobic001G223400 Sobic001G223400 Sobic001G410800--Sobic001G223400 Sobic001G220200--Sobic010G158766 Sobic001G220200--Sobic001G410800 Sobic001G220200--Sobic004G357033 Sobic004G344301 Sobic004G344301 Sobic001G220200--Sobic004G344301 Sobic001G220200--Sobic010G096801 Sobic007G224600 Sobic007G224600 Sobic001G220200--Sobic007G224600 Sobic001G220200--Sobic001G519300 Sobic009G225300 Sobic009G225300 Sobic001G220200--Sobic009G225300 Sobic004G357066 Sobic004G357066 Sobic001G220200--Sobic004G357066 Sobic005G232200--Sobic001G139600 Sobic005G232200--Sobic002G140100 Sobic005G232200--Sobic010G206700 Sobic005G232200--Sobic002G218200 Sobic005G232200--Sobic004G357066 Sobic005G232200--Sobic006G227800 Sobic005G232200--Sobic001G410800 Sobic005G232200--Sobic010G158100 Sobic005G232200--Sobic001G261553 Sobic010G158766--Sobic001G220200 Sobic010G158766--Sobic004G357033 Sobic010G158766--Sobic001G410800 Sobic010G158766--Sobic010G096801 Sobic010G158766--Sobic004G344301 Sobic010G158766--Sobic009G225300 Sobic006G259201 Sobic006G259201 Sobic010G158766--Sobic006G259201 Sobic010G158766--Sobic010G158100 Sobic010G158766--Sobic007G224600 Sobic001G535601--Sobic001G410800 Sobic001G535601--Sobic002G218200 Sobic001G535601--Sobic001G139600 Sobic003G224000 Sobic003G224000 Sobic001G535601--Sobic003G224000 Sobic001G535601--Sobic010G158100 Sobic001G535601--Sobic001G220200 Sobic001G535601--Sobic010G136601 Sobic001G535601--Sobic001G223400 Sobic001G535601--Sobic002G140100
Octagon: transcription factors


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