Gene annotation
Transcriptome id Sobic.001G051500.1
Synonym Sb01g004730
Functional annotation -
UniProt C5WX15
Pfam PF13959 PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF301
NCBI CDD -
KEGG Orthology K13179; DDX18, ATP-dependent RNA helicase DDX18/HAS1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G18600 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g58810.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a009133 , Zm00025a053975 , Zm00025a016542 , Zm00025a007714
Brachypodium KQJ89637 , KQJ92010 , PNT73958 , KQK12639
Barley HORVU4Hr1G000640.1 , HORVU4Hr1G000640.3 , HORVU5Hr1G010160.3 , HORVU5Hr1G010160.2
Wheat TraesCS6D02G292400 , TraesCS5B02G120400 , TraesCS5D02G050600 , TraesCS6B02G342900 , TraesCS6A02G312900 , TraesCS5A02G114200 , TraesCS5D02G127000 , TraesCS6A02G356000
Populus -


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cDNA sequences
Sobic.001G051500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140100 expressed protein -
2 Sobic.004G055800 splicing factor, arginine/serine-rich 12, putative, expressed -
3 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
4 Sobic.006G227800 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
5 Sobic.007G224600 - -
6 Sobic.001G139600 - -
7 Sobic.002G263900 expressed protein -
8 Sobic.002G326050 - -
9 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
10 Sobic.010G206700 expressed protein -
11 Sobic.002G218200 protein kinase domain containing protein, expressed -
12 Sobic.010G261300 protein kri1, putative, expressed K14786: protein KRI1
13 Sobic.005G232200 expressed protein -
14 Sobic.004G275500 helix-loop-helix DNA-binding protein, putative, expressed -
15 Sobic.001G220200 exo70 exocyst complex subunit domain containing protein, expressed -
16 Sobic.001G197500 - -
17 Sobic.002G284901 - -
18 Sobic.006G259201 - -
19 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
20 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic001G051500 Sobic001G051500 Sobic002G140100 Sobic002G140100 Sobic001G051500--Sobic002G140100 Sobic004G055800 Sobic004G055800 Sobic001G051500--Sobic004G055800 Sobic001G519300 Sobic001G519300 Sobic001G051500--Sobic001G519300 Sobic006G227800 Sobic006G227800 Sobic001G051500--Sobic006G227800 Sobic007G224600 Sobic007G224600 Sobic001G051500--Sobic007G224600 Sobic001G139600 Sobic001G139600 Sobic001G051500--Sobic001G139600 Sobic002G263900 Sobic002G263900 Sobic001G051500--Sobic002G263900 Sobic002G326050 Sobic002G326050 Sobic001G051500--Sobic002G326050 Sobic001G158000 Sobic001G158000 Sobic001G051500--Sobic001G158000 Sobic002G140100--Sobic001G139600 Sobic002G140100--Sobic002G326050 Sobic005G232200 Sobic005G232200 Sobic002G140100--Sobic005G232200 Sobic002G140100--Sobic006G227800 Sobic010G206700 Sobic010G206700 Sobic002G140100--Sobic010G206700 Sobic010G158100 Sobic010G158100 Sobic002G140100--Sobic010G158100 Sobic002G218200 Sobic002G218200 Sobic002G140100--Sobic002G218200 Sobic001G410800 Sobic001G410800 Sobic002G140100--Sobic001G410800 Sobic001G261553 Sobic001G261553 Sobic002G140100--Sobic001G261553 Sobic004G055800--Sobic002G140100 Sobic001G220200 Sobic001G220200 Sobic004G055800--Sobic001G220200 Sobic001G197500 Sobic001G197500 Sobic004G055800--Sobic001G197500 Sobic006G005000 Sobic006G005000 Sobic004G055800--Sobic006G005000 Sobic004G055800--Sobic006G227800 Sobic006G259201 Sobic006G259201 Sobic004G055800--Sobic006G259201 Sobic004G055800--Sobic007G224600 Sobic004G055800--Sobic001G519300 Sobic010G096801 Sobic010G096801 Sobic004G055800--Sobic010G096801 Sobic001G519300--Sobic007G224600 Sobic002G320900 Sobic002G320900 Sobic001G519300--Sobic002G320900 Sobic002G284901 Sobic002G284901 Sobic001G519300--Sobic002G284901 Sobic001G223400 Sobic001G223400 Sobic001G519300--Sobic001G223400 Sobic006G065700 Sobic006G065700 Sobic001G519300--Sobic006G065700 Sobic007G221800 Sobic007G221800 Sobic001G519300--Sobic007G221800 Sobic002G210200 Sobic002G210200 Sobic001G519300--Sobic002G210200 Sobic003G200501 Sobic003G200501 Sobic001G519300--Sobic003G200501 Sobic003G120400 Sobic003G120400 Sobic001G519300--Sobic003G120400 Sobic006G227800--Sobic002G140100 Sobic006G227800--Sobic001G139600 Sobic006G227800--Sobic002G326050 Sobic006G227800--Sobic001G519300 Sobic006G227800--Sobic002G218200 Sobic006G227800--Sobic005G232200 Sobic006G227800--Sobic001G410800 Sobic006G227800--Sobic001G220200 Sobic006G227800--Sobic010G158100 Sobic007G224600--Sobic001G519300 Sobic007G224600--Sobic002G320900 Sobic007G224600--Sobic002G284901 Sobic007G224600--Sobic007G221800 Sobic007G224600--Sobic002G210200 Sobic001G130900 Sobic001G130900 Sobic007G224600--Sobic001G130900 Sobic007G224600--Sobic003G200501 Sobic007G093400 Sobic007G093400 Sobic007G224600--Sobic007G093400 Sobic007G224600--Sobic006G065700 Sobic001G139600--Sobic005G232200 Sobic001G139600--Sobic002G140100 Sobic001G139600--Sobic002G218200 Sobic001G139600--Sobic010G206700 Sobic001G139600--Sobic010G158100 Sobic001G139600--Sobic001G410800 Sobic001G139600--Sobic002G326050 Sobic001G139600--Sobic001G261553 Sobic001G139600--Sobic006G227800 Sobic010G073300 Sobic010G073300 Sobic002G263900--Sobic010G073300 Sobic002G263900--Sobic002G320900 Sobic002G263900--Sobic007G224600 Sobic002G263900--Sobic002G284901 Sobic002G263900--Sobic006G065700 Sobic010G074980 Sobic010G074980 Sobic002G263900--Sobic010G074980 Sobic002G263900--Sobic001G519300 Sobic002G263900--Sobic003G120400 Sobic002G263900--Sobic007G093400 Sobic002G326050--Sobic002G140100 Sobic002G326050--Sobic010G158100 Sobic002G326050--Sobic001G139600 Sobic002G326050--Sobic006G227800 Sobic002G326050--Sobic001G158000 Sobic002G326050--Sobic001G220200 Sobic002G326050--Sobic001G519300 Sobic002G326050--Sobic002G218200 Sobic004G357033 Sobic004G357033 Sobic002G326050--Sobic004G357033 Sobic001G158000--Sobic007G221800 Sobic001G158000--Sobic002G326050 Sobic004G265400 Sobic004G265400 Sobic001G158000--Sobic004G265400 Sobic001G158000--Sobic001G519300 Sobic001G158000--Sobic007G224600 Sobic007G149600 Sobic007G149600 Sobic001G158000--Sobic007G149600 Sobic003G067500 Sobic003G067500 Sobic001G158000--Sobic003G067500 Sobic001G158000--Sobic003G200501 Sobic001G158000--Sobic002G210200
Octagon: transcription factors


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