Gene annotation
Transcriptome id Sobic.002G416000.1
Synonym ATPME2, Sb02g042780, PME2
Functional annotation pectinesterase, putative, expressed
UniProt C5X5J6
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF14
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT1G53830 : pectin methylesterase 2
RAP-DB (Rice) LOC_Os07g47830.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a024331 , Zm00025a049134 , Zm00025a030727
Brachypodium KQK14667 , KQK04130
Barley HORVU2Hr1G018710.1 , HORVU2Hr1G018710.3 , HORVU2Hr1G018710.2 , HORVU2Hr1G018710.4
Wheat TraesCS5A02G043800 , TraesCS2A02G109600 , TraesCS2D02G109800 , TraesCS2B02G127600 , TraesCS3A02G325500
Populus -


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cDNA sequences
Sobic.002G416000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G187600 DUF623 domain containing protein, expressed -
2 Sobic.001G180300 expressed protein -
3 Sobic.004G227000 expressed protein -
4 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
5 Sobic.003G235800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
6 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
7 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
8 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
9 Sobic.003G301200 expressed protein -
10 Sobic.002G425900 expressed protein -
11 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
12 Sobic.006G259201 - -
13 Sobic.009G152901 - -
14 Sobic.003G065001 - -
15 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
17 Sobic.003G367401 - -
18 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
19 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
20 Sobic.010G201000 - -


Gene co-expression network
sample Sobic002G416000 Sobic002G416000 Sobic006G187600 Sobic006G187600 Sobic002G416000--Sobic006G187600 Sobic001G180300 Sobic001G180300 Sobic002G416000--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic002G416000--Sobic004G227000 Sobic003G092200 Sobic003G092200 Sobic002G416000--Sobic003G092200 Sobic003G235800 Sobic003G235800 Sobic002G416000--Sobic003G235800 Sobic010G189800 Sobic010G189800 Sobic002G416000--Sobic010G189800 Sobic006G278400 Sobic006G278400 Sobic002G416000--Sobic006G278400 Sobic007G081300 Sobic007G081300 Sobic002G416000--Sobic007G081300 Sobic003G301200 Sobic003G301200 Sobic002G416000--Sobic003G301200 Sobic006G187600--Sobic001G180300 Sobic006G187600--Sobic004G227000 Sobic002G425900 Sobic002G425900 Sobic006G187600--Sobic002G425900 Sobic006G187600--Sobic003G092200 Sobic010G178900 Sobic010G178900 Sobic006G187600--Sobic010G178900 Sobic010G224800 Sobic010G224800 Sobic006G187600--Sobic010G224800 Sobic004G197300 Sobic004G197300 Sobic006G187600--Sobic004G197300 Sobic010G114400 Sobic010G114400 Sobic006G187600--Sobic010G114400 Sobic001G441800 Sobic001G441800 Sobic006G187600--Sobic001G441800 Sobic001G180300--Sobic006G187600 Sobic001G180300--Sobic004G227000 Sobic001G180300--Sobic006G278400 Sobic010G014200 Sobic010G014200 Sobic001G180300--Sobic010G014200 Sobic001G180300--Sobic003G092200 Sobic001G180300--Sobic002G425900 Sobic008G163600 Sobic008G163600 Sobic001G180300--Sobic008G163600 Sobic004G329100 Sobic004G329100 Sobic001G180300--Sobic004G329100 Sobic001G180300--Sobic010G178900 Sobic004G227000--Sobic006G278400 Sobic004G227000--Sobic001G180300 Sobic004G227000--Sobic002G425900 Sobic004G227000--Sobic006G187600 Sobic004G128600 Sobic004G128600 Sobic004G227000--Sobic004G128600 Sobic004G227000--Sobic010G224800 Sobic002G059200 Sobic002G059200 Sobic004G227000--Sobic002G059200 Sobic004G227000--Sobic004G329100 Sobic004G227000--Sobic010G114400 Sobic003G367401 Sobic003G367401 Sobic003G092200--Sobic003G367401 Sobic010G201000 Sobic010G201000 Sobic003G092200--Sobic010G201000 Sobic009G152901 Sobic009G152901 Sobic003G092200--Sobic009G152901 Sobic003G065001 Sobic003G065001 Sobic003G092200--Sobic003G065001 Sobic001G016900 Sobic001G016900 Sobic003G092200--Sobic001G016900 Sobic003G092200--Sobic001G441800 Sobic002G430200 Sobic002G430200 Sobic003G092200--Sobic002G430200 Sobic004G239000 Sobic004G239000 Sobic003G092200--Sobic004G239000 Sobic002G387100 Sobic002G387100 Sobic003G092200--Sobic002G387100 Sobic003G235800--Sobic003G301200 Sobic006G259201 Sobic006G259201 Sobic003G235800--Sobic006G259201 Sobic006G227800 Sobic006G227800 Sobic003G235800--Sobic006G227800 Sobic006G005000 Sobic006G005000 Sobic003G235800--Sobic006G005000 Sobic003G235800--Sobic007G081300 Sobic003G235800--Sobic002G416000 Sobic004G155900 Sobic004G155900 Sobic003G235800--Sobic004G155900 Sobic007G221800 Sobic007G221800 Sobic003G235800--Sobic007G221800 Sobic004G055800 Sobic004G055800 Sobic003G235800--Sobic004G055800 Sobic010G189800--Sobic007G081300 Sobic004G192700 Sobic004G192700 Sobic010G189800--Sobic004G192700 Sobic010G189800--Sobic003G092200 Sobic010G189800--Sobic006G187600 Sobic010G073300 Sobic010G073300 Sobic010G189800--Sobic010G073300 Sobic007G149600 Sobic007G149600 Sobic010G189800--Sobic007G149600 Sobic010G189800--Sobic004G227000 Sobic010G189800--Sobic003G301200 Sobic010G189800--Sobic001G441800 Sobic006G278400--Sobic004G227000 Sobic006G278400--Sobic001G180300 Sobic006G278400--Sobic003G301200 Sobic006G278400--Sobic008G163600 Sobic006G278400--Sobic007G081300 Sobic006G278400--Sobic006G187600 Sobic006G278400--Sobic010G014200 Sobic006G278400--Sobic002G425900 Sobic006G278400--Sobic004G128600 Sobic007G081300--Sobic003G301200 Sobic007G081300--Sobic006G278400 Sobic007G081300--Sobic010G189800 Sobic007G081300--Sobic001G180300 Sobic007G081300--Sobic003G092200 Sobic007G081300--Sobic004G227000 Sobic007G081300--Sobic007G149600 Sobic007G081300--Sobic006G187600 Sobic007G081300--Sobic006G005000 Sobic003G301200--Sobic007G081300 Sobic003G301200--Sobic006G278400 Sobic003G301200--Sobic003G235800 Sobic003G301200--Sobic001G180300 Sobic003G301200--Sobic004G227000 Sobic003G301200--Sobic010G189800 Sobic003G301200--Sobic008G163600 Sobic003G301200--Sobic006G005000 Sobic003G301200--Sobic006G187600
Octagon: transcription factors


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