Gene annotation
Transcriptome id Sobic.002G408500.1
Synonym Sb02g042230, B-box (BBX) protein, SbBBX4
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5X4V2
Pfam PF06203
Panther DB PTHR31717 PTHR31717:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G47890 : B-box type zinc finger protein with CCT domain
RAP-DB (Rice) LOC_Os07g47140.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a049082 , Zm00025a015379
Brachypodium KQK14754 , KQK14753 , PNT74596
Barley HORVU2Hr1G020760.7 , HORVU2Hr1G020760.6 , HORVU2Hr1G020760.4 , HORVU2Hr1G020760.2
Wheat TraesCS2A02G119600 , TraesCS2A02G119600 , TraesCS4D02G167300 , TraesCS4D02G167300 , TraesCS2D02G121400 , TraesCS2B02G140300 , TraesCS4D02G167300 , TraesCS4A02G140600 , TraesCS4A02G140600 , TraesCS4A02G140600 , TraesCS4A02G140600 , TraesCS4A02G140600 , TraesCS2D02G121400
Populus -


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cDNA sequences
Sobic.002G408500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
3 Sobic.009G229100 expressed protein -
4 Sobic.002G154300 serine/threonine-protein kinase receptor precursor, putative, expressed -
5 Sobic.003G364700 expressed protein -
6 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
7 Sobic.002G206400 similar to Os09g0423800 protein(PubMedID : 29862293)@AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
8 Sobic.002G025300 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
9 Sobic.010G271000 expansin precursor, putative, expressed -
10 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.004G049800 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
13 Sobic.003G145100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
15 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
16 Sobic.001G534300 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AT-GTL1, putative, expressed -
17 Sobic.002G237700 expressed protein -
18 Sobic.006G053800 LGC1, putative, expressed -
19 Sobic.001G155600 expansin precursor, putative, expressed -
20 Sobic.001G511200 expressed protein -


Gene co-expression network
sample Sobic002G408500 Sobic002G408500 Sobic008G137500 Sobic008G137500 Sobic002G408500--Sobic008G137500 Sobic005G111600 Sobic005G111600 Sobic002G408500--Sobic005G111600 Sobic009G229100 Sobic009G229100 Sobic002G408500--Sobic009G229100 Sobic002G154300 Sobic002G154300 Sobic002G408500--Sobic002G154300 Sobic003G364700 Sobic003G364700 Sobic002G408500--Sobic003G364700 Sobic010G191100 Sobic010G191100 Sobic002G408500--Sobic010G191100 Sobic002G206400 Sobic002G206400 Sobic002G408500--Sobic002G206400 Sobic002G025300 Sobic002G025300 Sobic002G408500--Sobic002G025300 Sobic010G271000 Sobic010G271000 Sobic002G408500--Sobic010G271000 Sobic008G137500--Sobic010G191100 Sobic008G137500--Sobic005G111600 Sobic008G137500--Sobic002G408500 Sobic008G137500--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic008G137500--Sobic006G228100 Sobic009G070000 Sobic009G070000 Sobic008G137500--Sobic009G070000 Sobic004G155900 Sobic004G155900 Sobic008G137500--Sobic004G155900 Sobic010G246500 Sobic010G246500 Sobic008G137500--Sobic010G246500 Sobic008G137500--Sobic002G154300 Sobic005G111600--Sobic009G070000 Sobic005G111600--Sobic008G137500 Sobic003G047300 Sobic003G047300 Sobic005G111600--Sobic003G047300 Sobic006G271100 Sobic006G271100 Sobic005G111600--Sobic006G271100 Sobic005G111600--Sobic009G229100 Sobic005G111600--Sobic006G228100 Sobic005G111600--Sobic002G408500 Sobic005G111600--Sobic002G206400 Sobic004G296100 Sobic004G296100 Sobic005G111600--Sobic004G296100 Sobic009G229100--Sobic003G364700 Sobic009G233600 Sobic009G233600 Sobic009G229100--Sobic009G233600 Sobic002G356700 Sobic002G356700 Sobic009G229100--Sobic002G356700 Sobic001G527500 Sobic001G527500 Sobic009G229100--Sobic001G527500 Sobic003G178200 Sobic003G178200 Sobic009G229100--Sobic003G178200 Sobic007G017900 Sobic007G017900 Sobic009G229100--Sobic007G017900 Sobic003G245700 Sobic003G245700 Sobic009G229100--Sobic003G245700 Sobic001G511200 Sobic001G511200 Sobic009G229100--Sobic001G511200 Sobic003G423100 Sobic003G423100 Sobic009G229100--Sobic003G423100 Sobic002G154300--Sobic010G191100 Sobic002G154300--Sobic010G271000 Sobic002G154300--Sobic008G137500 Sobic004G343700 Sobic004G343700 Sobic002G154300--Sobic004G343700 Sobic006G069500 Sobic006G069500 Sobic002G154300--Sobic006G069500 Sobic009G233500 Sobic009G233500 Sobic002G154300--Sobic009G233500 Sobic003G273800 Sobic003G273800 Sobic002G154300--Sobic003G273800 Sobic002G154300--Sobic001G511200 Sobic002G154300--Sobic002G408500 Sobic003G364700--Sobic009G229100 Sobic003G364700--Sobic001G511200 Sobic003G364700--Sobic002G356700 Sobic007G051501 Sobic007G051501 Sobic003G364700--Sobic007G051501 Sobic003G364700--Sobic009G233600 Sobic005G022400 Sobic005G022400 Sobic003G364700--Sobic005G022400 Sobic003G364700--Sobic003G423100 Sobic003G364700--Sobic003G178200 Sobic003G364700--Sobic009G070000 Sobic010G191100--Sobic008G137500 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic010G191100--Sobic002G154300 Sobic006G163600 Sobic006G163600 Sobic010G191100--Sobic006G163600 Sobic010G191100--Sobic010G246500 Sobic003G301200 Sobic003G301200 Sobic010G191100--Sobic003G301200 Sobic002G229800 Sobic002G229800 Sobic010G191100--Sobic002G229800 Sobic001G273100 Sobic001G273100 Sobic010G191100--Sobic001G273100 Sobic002G206400--Sobic005G111600 Sobic002G206400--Sobic009G070000 Sobic002G206400--Sobic002G025300 Sobic002G206400--Sobic004G296100 Sobic002G206400--Sobic003G047300 Sobic002G206400--Sobic006G271100 Sobic002G206400--Sobic006G228100 Sobic004G049800 Sobic004G049800 Sobic002G206400--Sobic004G049800 Sobic002G206400--Sobic008G137500 Sobic002G280500 Sobic002G280500 Sobic002G025300--Sobic002G280500 Sobic005G147800 Sobic005G147800 Sobic002G025300--Sobic005G147800 Sobic002G025300--Sobic004G296100 Sobic010G096200 Sobic010G096200 Sobic002G025300--Sobic010G096200 Sobic007G142300 Sobic007G142300 Sobic002G025300--Sobic007G142300 Sobic001G265900 Sobic001G265900 Sobic002G025300--Sobic001G265900 Sobic002G025300--Sobic002G206400 Sobic002G397400 Sobic002G397400 Sobic002G025300--Sobic002G397400 Sobic002G045200 Sobic002G045200 Sobic002G025300--Sobic002G045200 Sobic010G271000--Sobic009G233600 Sobic010G271000--Sobic002G154300 Sobic010G271000--Sobic003G273800 Sobic010G271000--Sobic001G511200 Sobic010G271000--Sobic009G229100 Sobic010G271000--Sobic006G069500 Sobic010G271000--Sobic002G356700 Sobic010G271000--Sobic003G364700 Sobic002G237700 Sobic002G237700 Sobic010G271000--Sobic002G237700
Octagon: transcription factors


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