Gene annotation
Transcriptome id Sobic.006G240300.2,Sobic.006G240300.1,Sobic.006G240300.3
Synonym ATEME1B, EME1B, Sb06g030640
Functional annotation expressed protein
UniProt A0A1Z5RG05 , C5Y925
Pfam PF02732
Panther DB PTHR13451 PTHR13451:SF9
NCBI CDD -
KEGG Orthology K10882; EME1, crossover junction endonuclease EME1
Gene Ontology GO:0004518; nuclease activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G22140 : essential meiotic endonuclease 1A,essential meiotic endonuclease 1B
RAP-DB (Rice) LOC_Os04g55500.1 : expressed protein
MaizeGDB (Corn) Zm00025a009550
Brachypodium KQJ84970
Barley -
Wheat TraesCS2D02G516300 , TraesCS2D02G516300 , TraesCS2B02G543100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G237700 expressed protein -
2 Sobic.010G260800 cyclin, putative, expressed K06627: cyclin-A
3 Sobic.003G273800 IQ calmodulin-binding motif domain containing protein, expressed -
4 Sobic.006G179200 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
5 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.002G362600 expressed protein -
7 Sobic.005G210600 expressed protein -
8 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
9 Sobic.007G153400 ANTH domain containing protein, expressed -
10 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
12 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G200500 pentatricopeptide, putative, expressed -
14 Sobic.007G207700 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
15 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
16 Sobic.006G069500 glutaredoxin, putative, expressed -
17 Sobic.004G180400 remorin family protein, putative, expressed -
18 Sobic.003G041700 DNA mismatch repair protein MSH6-2, putative, expressed K08737: DNA mismatch repair protein MSH6
19 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
20 Sobic.001G082800 ORC5 - Putative origin recognition complex subunit 5, expressed K02607: origin recognition complex subunit 5


Gene co-expression network
sample Sobic006G240300 Sobic006G240300 Sobic002G237700 Sobic002G237700 Sobic006G240300--Sobic002G237700 Sobic010G260800 Sobic010G260800 Sobic006G240300--Sobic010G260800 Sobic003G273800 Sobic003G273800 Sobic006G240300--Sobic003G273800 Sobic006G179200 Sobic006G179200 Sobic006G240300--Sobic006G179200 Sobic006G146900 Sobic006G146900 Sobic006G240300--Sobic006G146900 Sobic002G362600 Sobic002G362600 Sobic006G240300--Sobic002G362600 Sobic005G210600 Sobic005G210600 Sobic006G240300--Sobic005G210600 Sobic003G315700 Sobic003G315700 Sobic006G240300--Sobic003G315700 Sobic007G153400 Sobic007G153400 Sobic006G240300--Sobic007G153400 Sobic002G237700--Sobic003G273800 Sobic009G233600 Sobic009G233600 Sobic002G237700--Sobic009G233600 Sobic006G069500 Sobic006G069500 Sobic002G237700--Sobic006G069500 Sobic001G511200 Sobic001G511200 Sobic002G237700--Sobic001G511200 Sobic002G237700--Sobic006G240300 Sobic005G188400 Sobic005G188400 Sobic002G237700--Sobic005G188400 Sobic002G356700 Sobic002G356700 Sobic002G237700--Sobic002G356700 Sobic004G180400 Sobic004G180400 Sobic002G237700--Sobic004G180400 Sobic009G229100 Sobic009G229100 Sobic002G237700--Sobic009G229100 Sobic009G214500 Sobic009G214500 Sobic010G260800--Sobic009G214500 Sobic002G390800 Sobic002G390800 Sobic010G260800--Sobic002G390800 Sobic001G380700 Sobic001G380700 Sobic010G260800--Sobic001G380700 Sobic001G126800 Sobic001G126800 Sobic010G260800--Sobic001G126800 Sobic007G102000 Sobic007G102000 Sobic010G260800--Sobic007G102000 Sobic001G323400 Sobic001G323400 Sobic010G260800--Sobic001G323400 Sobic010G038200 Sobic010G038200 Sobic010G260800--Sobic010G038200 Sobic005G210500 Sobic005G210500 Sobic010G260800--Sobic005G210500 Sobic006G126800 Sobic006G126800 Sobic010G260800--Sobic006G126800 Sobic003G273800--Sobic006G069500 Sobic003G273800--Sobic002G237700 Sobic003G273800--Sobic001G511200 Sobic009G178900 Sobic009G178900 Sobic003G273800--Sobic009G178900 Sobic003G273800--Sobic009G233600 Sobic004G077100 Sobic004G077100 Sobic003G273800--Sobic004G077100 Sobic003G273800--Sobic004G180400 Sobic003G273800--Sobic005G188400 Sobic001G059900 Sobic001G059900 Sobic003G273800--Sobic001G059900 Sobic004G053900 Sobic004G053900 Sobic006G179200--Sobic004G053900 Sobic010G105400 Sobic010G105400 Sobic006G179200--Sobic010G105400 Sobic008G148000 Sobic008G148000 Sobic006G179200--Sobic008G148000 Sobic002G113400 Sobic002G113400 Sobic006G179200--Sobic002G113400 Sobic006G035600 Sobic006G035600 Sobic006G179200--Sobic006G035600 Sobic001G131300 Sobic001G131300 Sobic006G179200--Sobic001G131300 Sobic001G170800 Sobic001G170800 Sobic006G179200--Sobic001G170800 Sobic007G125300 Sobic007G125300 Sobic006G179200--Sobic007G125300 Sobic005G000500 Sobic005G000500 Sobic006G179200--Sobic005G000500 Sobic002G120200 Sobic002G120200 Sobic006G146900--Sobic002G120200 Sobic002G200500 Sobic002G200500 Sobic006G146900--Sobic002G200500 Sobic006G146900--Sobic002G237700 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic006G146900--Sobic009G233600 Sobic002G362600--Sobic006G179200 Sobic002G362600--Sobic003G273800 Sobic002G362600--Sobic010G260800 Sobic002G362600--Sobic006G240300 Sobic001G175000 Sobic001G175000 Sobic002G362600--Sobic001G175000 Sobic002G297500 Sobic002G297500 Sobic002G362600--Sobic002G297500 Sobic002G362600--Sobic004G053900 Sobic004G117300 Sobic004G117300 Sobic002G362600--Sobic004G117300 Sobic008G129200 Sobic008G129200 Sobic002G362600--Sobic008G129200 Sobic007G207700 Sobic007G207700 Sobic005G210600--Sobic007G207700 Sobic005G016300 Sobic005G016300 Sobic005G210600--Sobic005G016300 Sobic001G379500 Sobic001G379500 Sobic005G210600--Sobic001G379500 Sobic006G134200 Sobic006G134200 Sobic005G210600--Sobic006G134200 Sobic009G101100 Sobic009G101100 Sobic005G210600--Sobic009G101100 Sobic005G210600--Sobic004G180400 Sobic005G210600--Sobic006G179200 Sobic001G140600 Sobic001G140600 Sobic005G210600--Sobic001G140600 Sobic010G003300 Sobic010G003300 Sobic005G210600--Sobic010G003300 Sobic003G315700--Sobic008G148000 Sobic006G193100 Sobic006G193100 Sobic003G315700--Sobic006G193100 Sobic004G306100 Sobic004G306100 Sobic003G315700--Sobic004G306100 Sobic002G290000 Sobic002G290000 Sobic003G315700--Sobic002G290000 Sobic009G202801 Sobic009G202801 Sobic003G315700--Sobic009G202801 Sobic004G328300 Sobic004G328300 Sobic003G315700--Sobic004G328300 Sobic003G409600 Sobic003G409600 Sobic003G315700--Sobic003G409600 Sobic003G315700--Sobic002G113400 Sobic009G052100 Sobic009G052100 Sobic003G315700--Sobic009G052100 Sobic001G530300 Sobic001G530300 Sobic007G153400--Sobic001G530300 Sobic006G228100 Sobic006G228100 Sobic007G153400--Sobic006G228100 Sobic007G017900 Sobic007G017900 Sobic007G153400--Sobic007G017900 Sobic003G021800 Sobic003G021800 Sobic007G153400--Sobic003G021800 Sobic007G153400--Sobic002G237700 Sobic007G153400--Sobic009G233600 Sobic007G153400--Sobic001G511200 Sobic007G153400--Sobic006G069500 Sobic004G225400 Sobic004G225400 Sobic007G153400--Sobic004G225400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.