Gene annotation
Transcriptome id Sobic.002G120200.1
Synonym CRR2, Sb02g010240
Functional annotation pentatricopeptide, putative, expressed
UniProt C5X505
Pfam PF01535 PF13812
Panther DB PTHR24015:SF675 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12770 : mitochondrial editing factor 22
RAP-DB (Rice) LOC_Os07g25500.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a045781
Brachypodium PNT75238 , KQK16486 , KQK16487 , KQK16485 , KQK16488 , KQK16489
Barley HORVU3Hr1G075600.3 , HORVU3Hr1G075600.2 , HORVU3Hr1G075600.1 , HORVU5Hr1G008310.2 , HORVU5Hr1G008310.1 , HORVU1Hr1G020190.15 , HORVU1Hr1G020190.14 , HORVU1Hr1G020190.11 , HORVU1Hr1G020190.10 , HORVU1Hr1G020190.16 , HORVU1Hr1G020190.12 , HORVU1Hr1G020190.7 , HORVU1Hr1G020190.5 , HORVU1Hr1G020190.4 , HORVU1Hr1G020190.3 , HORVU1Hr1G020190.1 , HORVU1Hr1G020190.9 , HORVU1Hr1G020190.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.002G034400 expressed protein -
3 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
4 Sobic.001G451200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
5 Sobic.002G200500 pentatricopeptide, putative, expressed -
6 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.006G073150 - -
9 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
10 Sobic.001G267266 - -
11 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
12 Sobic.002G237700 expressed protein -
13 Sobic.001G362400 PPR repeat containing protein, expressed -
14 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
15 Sobic.006G212000 PPR repeat domain containing protein, putative, expressed -
16 Sobic.002G219500 ATPase, putative, expressed -
17 Sobic.004G205200 PPR repeat containing protein, expressed -
18 Sobic.002G022600 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
19 Sobic.003G311400 - -
20 Sobic.010G085900 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic002G120200 Sobic002G120200 Sobic006G146900 Sobic006G146900 Sobic002G120200--Sobic006G146900 Sobic002G034400 Sobic002G034400 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G200500 Sobic002G200500 Sobic002G120200--Sobic002G200500 Sobic004G356600 Sobic004G356600 Sobic002G120200--Sobic004G356600 Sobic009G233600 Sobic009G233600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic006G146900--Sobic002G120200 Sobic006G146900--Sobic002G200500 Sobic002G237700 Sobic002G237700 Sobic006G146900--Sobic002G237700 Sobic006G240300 Sobic006G240300 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic006G146900--Sobic009G233600 Sobic002G034400--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic002G034400--Sobic005G097700 Sobic002G356700 Sobic002G356700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G052500 Sobic002G052500 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700 Sobic006G260600--Sobic002G034400 Sobic006G260600--Sobic002G052500 Sobic006G260600--Sobic002G356700 Sobic006G260600--Sobic009G233600 Sobic006G260600--Sobic004G356600 Sobic003G051800 Sobic003G051800 Sobic006G260600--Sobic003G051800 Sobic006G260600--Sobic002G004400 Sobic006G260600--Sobic006G090201 Sobic007G085350 Sobic007G085350 Sobic006G260600--Sobic007G085350 Sobic001G451200--Sobic006G073150 Sobic001G267266 Sobic001G267266 Sobic001G451200--Sobic001G267266 Sobic001G451200--Sobic002G120200 Sobic007G072800 Sobic007G072800 Sobic001G451200--Sobic007G072800 Sobic009G213300 Sobic009G213300 Sobic001G451200--Sobic009G213300 Sobic010G153532 Sobic010G153532 Sobic001G451200--Sobic010G153532 Sobic001G451200--Sobic002G034400 Sobic001G419900 Sobic001G419900 Sobic001G451200--Sobic001G419900 Sobic003G221300 Sobic003G221300 Sobic001G451200--Sobic003G221300 Sobic002G200500--Sobic006G146900 Sobic002G200500--Sobic002G120200 Sobic002G200500--Sobic001G362400 Sobic003G222400 Sobic003G222400 Sobic002G200500--Sobic003G222400 Sobic002G200500--Sobic006G240300 Sobic004G339000 Sobic004G339000 Sobic002G200500--Sobic004G339000 Sobic010G018800 Sobic010G018800 Sobic002G200500--Sobic010G018800 Sobic010G256433 Sobic010G256433 Sobic002G200500--Sobic010G256433 Sobic002G200500--Sobic002G034400 Sobic004G356600--Sobic006G090201 Sobic007G072901 Sobic007G072901 Sobic004G356600--Sobic007G072901 Sobic009G010800 Sobic009G010800 Sobic004G356600--Sobic009G010800 Sobic001G361500 Sobic001G361500 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic006G185400 Sobic006G185400 Sobic004G356600--Sobic006G185400 Sobic004G356600--Sobic003G245700 Sobic009G233600--Sobic002G356700 Sobic009G229100 Sobic009G229100 Sobic009G233600--Sobic009G229100 Sobic003G364700 Sobic003G364700 Sobic009G233600--Sobic003G364700 Sobic001G511200 Sobic001G511200 Sobic009G233600--Sobic001G511200 Sobic009G233600--Sobic004G356600 Sobic005G022400 Sobic005G022400 Sobic009G233600--Sobic005G022400 Sobic010G145200 Sobic010G145200 Sobic009G233600--Sobic010G145200 Sobic003G178200 Sobic003G178200 Sobic009G233600--Sobic003G178200 Sobic009G233600--Sobic002G237700 Sobic006G073150--Sobic001G451200 Sobic006G073150--Sobic007G072800 Sobic002G416200 Sobic002G416200 Sobic006G073150--Sobic002G416200 Sobic006G073150--Sobic001G267266 Sobic003G048700 Sobic003G048700 Sobic006G073150--Sobic003G048700 Sobic003G290600 Sobic003G290600 Sobic006G073150--Sobic003G290600 Sobic002G018901 Sobic002G018901 Sobic006G073150--Sobic002G018901 Sobic006G073150--Sobic002G120200 Sobic006G073150--Sobic010G153532 Sobic009G070000 Sobic009G070000 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G228100 Sobic006G228100 Sobic006G271100--Sobic006G228100 Sobic001G399400 Sobic001G399400 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic006G271100--Sobic001G511200 Sobic003G184500 Sobic003G184500 Sobic006G271100--Sobic003G184500 Sobic006G271100--Sobic009G229100 Sobic002G219500 Sobic002G219500 Sobic006G271100--Sobic002G219500
Octagon: transcription factors


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